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基于分子对接方法研究硒纳米颗粒对群体感应系统LasI/R、RhlI/R和PQS/MvfR的抗群体感应潜力

Anti-quorum sensing potential of selenium nanoparticles against LasI/R, RhlI/R, and PQS/MvfR in : a molecular docking approach.

作者信息

Kanak Kanak Raj, Dass Regina Sharmila, Pan Archana

机构信息

Fungal Genetics and Mycotoxicology Laboratory, Department of Microbiology, School of Life Sciences, Pondicherry University (A Central University), Pondicherry, India.

Department of Bioinformatics, School of Life Sciences, Pondicherry University (A Central University), Pondicherry, India.

出版信息

Front Mol Biosci. 2023 Aug 10;10:1203672. doi: 10.3389/fmolb.2023.1203672. eCollection 2023.

Abstract

is an infectious pathogen which has the ability to cause primary and secondary contagions in the blood, lungs, and other body parts of immunosuppressed individuals, as well as community-acquired diseases, such as folliculitis, osteomyelitis, pneumonia, and others. This opportunistic bacterium displays drug resistance and regulates its pathogenicity via the quorum sensing (QS) mechanism, which includes the LasI/R, RhlI/R, and PQS/MvfR systems. Targeting the QS systems might be an excellent way to treat infections. Although a wide array of antibiotics, namely, newer penicillins, cephalosporins, and combination drugs are being used, the use of selenium nanoparticles (SeNPs) to cure infections is extremely rare as their mechanistic interactions are weakly understood, which results in carrying out this study. The present study demonstrates a computational approach of binding the interaction pattern between SeNPs and the QS signaling proteins in , utilizing multiple bioinformatics approaches. The computational investigation revealed that SeNPs were acutely 'locked' into the active region of the relevant proteins by the abundant residues in their surroundings. The PatchDock-based molecular docking analysis evidently indicated the strong and significant interaction between SeNPs and the catalytic cleft of LasI synthase (Phe105-Se = 2.7 Å and Thr121-Se = 3.8 Å), RhlI synthase (Leu102-Se = 3.7 Å and Val138-Se = 3.2 Å), transcriptional receptor protein LasR (Lys42-Se = 3.9 Å, Arg122-Se = 3.2 Å, and Glu124-Se = 3.9 Å), RhlR (Tyr43-Se = 2.9 Å, Tyr45-Se = 3.4 Å, and His61-Se = 3.5 Å), and MvfR (Leu208-Se = 3.2 Å and Arg209-Se = 4.0 Å). The production of acyl homoserine lactones (AHLs) was inhibited by the use of SeNPs, thereby preventing QS as well. Obstructing the binding affinity of transcriptional regulatory proteins may cause the suppression of LasR, RhlR, and MvfR systems to become inactive, thereby blocking the activation of QS-regulated virulence factors along with their associated gene expression. Our findings clearly showed that SeNPs have anti-QS properties against the established QS systems of , which strongly advocated that SeNPs might be a potent solution to tackle drug resistance and a viable alternative to conventional antibiotics along with being helpful in therapeutic development to cure infections.

摘要

是一种传染性病原体,能够在免疫抑制个体的血液、肺部和身体其他部位引起原发性和继发性感染,以及社区获得性疾病,如毛囊炎、骨髓炎、肺炎等。这种机会性细菌具有耐药性,并通过群体感应(QS)机制调节其致病性,该机制包括LasI/R、RhlI/R和PQS/MvfR系统。靶向QS系统可能是治疗感染的一种极好方法。尽管正在使用各种各样的抗生素,即新型青霉素、头孢菌素和联合药物,但使用硒纳米颗粒(SeNPs)治疗感染极为罕见,因为人们对它们的作用机制相互作用了解甚少,因此开展了本研究。本研究利用多种生物信息学方法,展示了一种计算方法,用于结合SeNPs与相关QS信号蛋白之间的相互作用模式。计算研究表明,SeNPs被其周围丰富的残基“紧紧锁定”在相关蛋白质的活性区域。基于PatchDock的分子对接分析明显表明,SeNPs与LasI合酶(Phe105-Se = 2.7 Å和Thr121-Se = 3.8 Å)、RhlI合酶(Leu102-Se = 3.7 Å和Val138-Se = 3.2 Å)、转录受体蛋白LasR(Lys42-Se = 3.9 Å、Arg122-Se = 3.2 Å和Glu124-Se = 3.9 Å)、RhlR(Tyr43-Se = 2.9 Å、Tyr45-Se = 3.4 Å和His61-Se = 3.5 Å)以及MvfR(Leu208-Se = 3.2 Å和Arg209-Se = 4.0 Å)的催化裂隙之间存在强烈且显著的相互作用。使用SeNPs可抑制酰基高丝氨酸内酯(AHLs)的产生,从而也阻止了群体感应。阻碍转录调节蛋白的结合亲和力可能会导致LasR、RhlR和MvfR系统的抑制变得不活跃,从而阻断群体感应调节的毒力因子及其相关基因表达的激活。我们的研究结果清楚地表明,SeNPs对已建立的相关群体感应系统具有抗群体感应特性,这有力地表明SeNPs可能是解决耐药性的有效方案,是传统抗生素的可行替代品,并且有助于治疗感染的治疗开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3354/10449602/98f64b885ac5/fmolb-10-1203672-g001.jpg

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