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全基因组水平上对甜菜(Beta vulgaris)扩张蛋白基因家族的研究及其在非生物胁迫下的表达响应。

Investigation of the expansin gene family in sugar beet (Beta vulgaris) by the genome-wide level and their expression responses under abiotic stresses.

作者信息

Faris Abdulkhadum Al-Mamoorı Dima, Celik Altunoglu Yasemin, Horuz Erdoğan, Özkan Kök Büşra

机构信息

Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey.

出版信息

Biol Futur. 2023 Sep;74(3):295-307. doi: 10.1007/s42977-023-00176-1. Epub 2023 Aug 29.

Abstract

Sugar beet (Beta vulgaris ssp. vulgaris) is primarily used in sugar production worldwide. Expansins are a gene family of cell wall proteins effective in regulating cell wall structure. They also participate in developmental stages, including cell and leaf growth, root development, and fruit ripening. This study comprehensively characterizes the expansin gene family members found in the sugar beet genome. In addition, in silico expression analysis of sugar beet expansin genes under variable abiotic stress conditions and expression profiles of expansin genes under combined drought and heat stresses by the qRT-PCR method were evaluated in the study. A total of 31 sugar beet expansin genes were identified. BvuEXLA-02 and BvuEXLB-02 genes can have abiotic stress tolerance roles besides their roles in normal development. Determining the properties of sugar beet expansin, family members can help enable the cellulose hydrolysis mechanism and raise plant biomass. Elucidating expression profiles of the sugar beet expansin genes under variable stress conditions can support improving plant productivity. The results of the current study may also contribute to the deep understanding of sugar beet expansin genes in the future.

摘要

甜菜(Beta vulgaris ssp. vulgaris)在全球主要用于制糖。扩张蛋白是细胞壁蛋白的一个基因家族,对调节细胞壁结构有效。它们还参与包括细胞和叶片生长、根系发育以及果实成熟在内的发育阶段。本研究全面表征了甜菜基因组中发现的扩张蛋白基因家族成员。此外,该研究还通过qRT-PCR方法评估了甜菜扩张蛋白基因在可变非生物胁迫条件下的电子表达分析以及在干旱和热胁迫组合条件下扩张蛋白基因的表达谱。共鉴定出31个甜菜扩张蛋白基因。BvuEXLA-02和BvuEXLB-02基因除了在正常发育中的作用外,还可能具有非生物胁迫耐受性作用。确定甜菜扩张蛋白家族成员的特性有助于启用纤维素水解机制并提高植物生物量。阐明甜菜扩张蛋白基因在可变胁迫条件下的表达谱有助于提高植物生产力。本研究结果未来也可能有助于深入了解甜菜扩张蛋白基因。

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