CellProfiler插件——用于容器和Python工具的简易图像分析平台集成。
CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools.
作者信息
Weisbart Erin, Tromans-Coia Callum, Diaz-Rohrer Barbara, Stirling David R, Garcia-Fossa Fernanda, Senft Rebecca A, Hiner Mark C, de Jesus Marcelo B, Eliceiri Kevin W, Cimini Beth A
机构信息
Broad Institute of MIT and Harvard, Cambridge MA, USA.
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, São Paulo, Brazil.
出版信息
ArXiv. 2023 Aug 15:arXiv:2306.01915v2.
CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler-plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency-heavy. Here, we present an upgraded CellProfiler-plugins repository, an example of accessing containerized tools, improved documentation, and added citation/reference tools to facilitate the use and contribution of the community.
CellProfiler是一款广泛使用的软件，用于创建可重复、可复用的图像分析工作流程，而无需编写代码。除了构成主要CellProfiler程序的90多个模块外，CellProfiler还有一个插件系统，可用于创建与其他Python工具或软件容器中打包的工具集成的新模块。CellProfiler插件存储库包含许多这样的CellProfiler模块，尤其是实验性和/或依赖性强的模块。在这里，我们展示了一个升级后的CellProfiler插件存储库、一个访问容器化工具的示例、改进的文档以及添加的引用/参考工具，以促进社区的使用和贡献。
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