CellProfiler插件 - 一个便于将图像分析平台集成到容器和Python工具中的工具。
CellProfiler plugins - An easy image analysis platform integration for containers and Python tools.
作者信息
Weisbart Erin, Tromans-Coia Callum, Diaz-Rohrer Barbara, Stirling David R, Garcia-Fossa Fernanda, Senft Rebecca A, Hiner Mark C, de Jesus Marcelo B, Eliceiri Kevin W, Cimini Beth A
机构信息
Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, São Paulo, Brazil.
出版信息
J Microsc. 2024 Dec;296(3):227-234. doi: 10.1111/jmi.13223. Epub 2023 Sep 23.
Abstract
CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler-plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency-heavy. Here, we present an upgraded CellProfiler-plugins repository, an example of accessing containerised tools, improved documentation and added citation/reference tools to facilitate the use and contribution of the community.
摘要
CellProfiler是一款广泛使用的软件，可用于创建可重复、可复用的图像分析工作流程，而无需编写代码。除了构成CellProfiler主程序的90多个模块外，CellProfiler还有一个插件系统，可用于创建与其他Python工具或软件容器中打包的工具集成的新模块。CellProfiler插件存储库包含许多这样的CellProfiler模块，特别是那些实验性的和/或依赖项繁重的模块。在这里，我们展示了一个升级后的CellProfiler插件存储库、一个访问容器化工具的示例、改进的文档以及添加的引用/参考工具，以促进社区的使用和贡献。
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