Axell-House Dierdre B, Simar Shelby R, Panesso Diana, Rincon Sandra, Miller William R, Khan Ayesha, Pemberton Orville A, Valdez Lizbet, Nguyen April H, Hood Kara S, Rydell Kirsten, DeTranaltes Andrea M, Jones Mary N, Atterstrom Rachel, Reyes Jinnethe, Sahasrabhojane Pranoti V, Suleyman Geehan, Zervos Marcus, Shelburne Samuel A, Singh Kavindra V, Shamoo Yousif, Hanson Blake M, Tran Truc T, Arias Cesar A
bioRxiv. 2023 Aug 18:2023.08.18.553907. doi: 10.1101/2023.08.18.553907.
Daptomycin (DAP) is often used as a first line therapy to treat vancomycin-resistant (VR ) infections but emergence of DAP non-susceptibility threatens the effectiveness of this antibiotic. Moreover, current methods to determine DAP MICs have poor reproducibility and accuracy. In enterococci, DAP resistance is mediated by the LiaFSR cell membrane stress response system and deletion of encoding the response regulator results in hypersusceptibility to DAP and antimicrobial peptides. The main genes regulated by LiaR are a cluster of three genes, designated . In , LiaX is surface exposed with a C-terminus that functions as a negative regulator of cell membrane remodeling and an N-terminal domain that is released to the extracellular medium where it binds DAP. Thus, in , LiaX functions as a sentinel molecule recognizing DAP and controlling the cell membrane response, but less is known about LiaX in . Here, we found that is essential in ( ) with an activated LiaFSR system. Unlike , LiaX is not detected in the extracellular milieu and does not appear to alter phospholipid architecture. We further postulated that LiaX could be used as a surrogate marker for cell envelope activation and non-susceptibility to DAP. For this purpose, we developed and optimized a LiaX ELISA. We then assessed 86 clinical BSI isolates for DAP MICs and used whole genome sequencing to assess for substitutions in LiaX. All DAP-R clinical strains of exhibited elevated LiaX levels. Strikingly, 73% of DAP-S isolates by standard MIC determination had elevated LiaX ELISAs above the established cut-off. Phylogenetic analyses of predicted amino acid substitutions showed 12 different variants of LiaX without a specific association with DAP MIC or LiaX ELISA values. Our findings also suggest that many isolates that test DAP susceptible by standard MIC determination are likely to have an activated cell stress response that may predispose to DAP failure. As LiaX appears to be essential for the cell envelope response to DAP, its detection could prove useful to improve the accuracy of susceptibility testing by anticipating therapeutic failure.
达托霉素(DAP)常被用作治疗耐万古霉素(VR)感染的一线疗法,但对DAP不敏感的情况出现,威胁到了这种抗生素的有效性。此外,目前测定DAP最低抑菌浓度(MIC)的方法重复性和准确性较差。在肠球菌中,DAP耐药性由LiaFSR细胞膜应激反应系统介导,编码反应调节因子的基因缺失会导致对DAP和抗菌肽高度敏感。由LiaR调控的主要基因是一组三个基因,命名为 。在 中,LiaX暴露于表面,其C末端作为细胞膜重塑的负调节因子,N末端结构域释放到细胞外介质中并与DAP结合。因此,在 中,LiaX作为识别DAP并控制细胞膜反应的哨兵分子,但在 中对LiaX的了解较少。在这里,我们发现 在具有激活的LiaFSR系统的 ( )中是必不可少的。与 不同,在细胞外环境中未检测到LiaX,并且它似乎不会改变磷脂结构。我们进一步推测,LiaX可作为细胞膜激活和对DAP不敏感的替代标志物。为此,我们开发并优化了一种LiaX酶联免疫吸附测定(ELISA)。然后,我们评估了86株临床 血流感染(BSI)分离株的DAP MIC,并使用全基因组测序评估LiaX中的替代情况。所有DAP耐药的临床 菌株均表现出LiaX水平升高。引人注目的是,通过标准MIC测定法判定为DAP敏感的分离株中,73%的LiaX ELISA值高于既定的临界值。对预测氨基酸替代的系统发育分析显示,LiaX有12种不同变体,与DAP MIC或LiaX ELISA值无特定关联。我们的研究结果还表明,许多通过标准MIC测定法检测为DAP敏感的 分离株可能具有激活的细胞应激反应,这可能导致DAP治疗失败。由于LiaX似乎对细胞膜对DAP的反应至关重要,其检测可能有助于通过预测治疗失败来提高药敏试验的准确性。