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奥希替尼耐药预后基因特征:STRIP2 与肺腺癌的免疫浸润和肿瘤进展相关。

Osimertinib resistance prognostic gene signature: STRIP2 is associated with immune infiltration and tumor progression in lung adenocarcinoma.

机构信息

Shenzhen Bao'an Chinese Medicine Hospital, Guangzhou University of Chinese Medicine, Shenzhen, China.

出版信息

J Cancer Res Clin Oncol. 2023 Nov;149(17):15573-15588. doi: 10.1007/s00432-023-05294-w. Epub 2023 Aug 31.


DOI:10.1007/s00432-023-05294-w
PMID:37648810
Abstract

OBJECTIVE: Although the use of osimertinib can significantly improve the survival time of lung adenocarcinoma (LUAD) patients with epithelial growth factor receptor mutation, eventually drug resistance will limit the survival benefit of most patients. This study aimed to develop a novel prognostic predictive signature based on genes associated with osimertinib resistance. METHODS: The differentially expressed genes (DEGs) associated with osimertinib resistance in LUAD were screened from Gene Expression Omnibus datasets and The Cancer Genome Atlas datasets. Multivariate cox regression was used to establish a prognostic signature, and then a nomogram was developed to predict the survival probability of LUAD patients. We used ROC curve and DCA curve to evaluate its clinical prediction accuracy and net benefit. In addition, the differentially expressed genes significantly associated with prognosis were selected for immune infiltration analysis and drug sensitivity analysis, and their roles in the progression of lung adenocarcinoma were verified by in vitro experiments. RESULTS: Our evaluation results indicated that the new nomogram had higher clinical prediction accuracy and net benefit value than the TN nomogram. Further analysis showed that patients with low STRIP2 expression had a higher level of immune response, and may be more likely to benefit from immune checkpoint inhibitors and conventional antitumor drugs. This may help to select more precise and appropriate therapy for LUAD patients with osimertinib resistance. Furthermore, in vitro experiments showed that STRIP2 promoted the LUAD cells proliferation, migration and invasion. This further demonstrates the importance of this gene signature for prognostic prediction. CONCLUSION: We developed a reliable prognostic model based on DEGs associated with osimertinib resistance and screened for biomarker that can predict the immune response in LUAD patients, which may help in the selection of treatment regimens after osimertinib resistance.

摘要

目的:尽管奥希替尼的使用能显著改善表皮生长因子受体突变型肺腺癌(LUAD)患者的生存时间,但最终药物耐药会限制大多数患者的生存获益。本研究旨在基于与奥希替尼耐药相关的基因,建立一种新的预测预后的标志物。

方法:从基因表达综合数据库和癌症基因组图谱数据库中筛选与奥希替尼耐药相关的差异表达基因(DEGs)。采用多变量 cox 回归建立预后标志物,并构建诺莫图预测 LUAD 患者的生存概率。我们使用 ROC 曲线和 DCA 曲线评估其临床预测准确性和净获益。此外,选择与预后显著相关的差异表达基因进行免疫浸润分析和药物敏感性分析,并通过体外实验验证其在肺腺癌进展中的作用。

结果:我们的评估结果表明,新的诺莫图具有更高的临床预测准确性和净获益值,优于 TN 诺莫图。进一步分析显示,STRIP2 低表达的患者具有更高水平的免疫反应,可能更有可能从免疫检查点抑制剂和常规抗肿瘤药物中获益。这可能有助于为奥希替尼耐药的 LUAD 患者选择更精确和合适的治疗方案。此外,体外实验表明 STRIP2 促进了 LUAD 细胞的增殖、迁移和侵袭。这进一步证明了该基因标志物在预后预测中的重要性。

结论:我们基于与奥希替尼耐药相关的 DEGs 建立了一个可靠的预后模型,并筛选出可预测 LUAD 患者免疫反应的生物标志物,这可能有助于在奥希替尼耐药后选择治疗方案。

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引用本文的文献

[1]
Integrative bulk RNA analysis unveils immune evasion mechanisms and predictive biomarkers of osimertinib resistance in non-small cell lung cancer.

Discov Oncol. 2025-8-12

本文引用的文献

[1]
STRIP2 motivates non-small cell lung cancer progression by modulating the TMBIM6 stability through IGF2BP3 dependent.

J Exp Clin Cancer Res. 2023-1-13

[2]
EGFR inhibition in EGFR-mutant lung cancer cells perturbs innate immune signaling pathways in the tumor microenvironment.

Cancer Sci. 2023-4

[3]
Comprehensive analysis reveals the potential value of inflammatory response genes in the prognosis, immunity, and drug sensitivity of lung adenocarcinoma.

BMC Med Genomics. 2022-9-18

[4]
THZ1 targeting CDK7 suppresses c-KIT transcriptional activity in gastrointestinal stromal tumours.

Cell Commun Signal. 2022-9-8

[5]
AC099850.3/NCAPG Axis Predicts Poor Prognosis and is Associated with Resistance to EGFR Tyrosine-Kinase Inhibitors in Lung Adenocarcinoma.

Int J Gen Med. 2022-8-29

[6]
Mutation Association with Immune Checkpoint Inhibitor Outcome in Melanoma and Non-Small Cell Lung Cancer.

Cancers (Basel). 2022-7-19

[7]
Combinatorial targeting of Hippo-STRIPAK and PARP elicits synthetic lethality in gastrointestinal cancers.

J Clin Invest. 2022-5-2

[8]
TKI resistant-based prognostic immune related gene signature in LUAD, in which FSCN1 contributes to tumor progression.

Cancer Lett. 2022-4-28

[9]
Neoantigen-driven B cell and CD4 T follicular helper cell collaboration promotes anti-tumor CD8 T cell responses.

Cell. 2021-12-9

[10]
oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data.

Brief Bioinform. 2021-11-5

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