State Key Laboratory of Cotton Biology, Institute of Cotton Research of the Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
BMC Plant Biol. 2023 Sep 2;23(1):409. doi: 10.1186/s12870-023-04419-0.
Cytokinin oxidase/dehydrogenase (CKX) plays a vital role in response to abiotic stress through modulating the antioxidant enzyme activities. Nevertheless, the biological function of the CKX gene family has yet to be reported in cotton.
In this study, a total of 27 GhCKXs were identified by the genome-wide investigation and distributed across 18 chromosomes. Phylogenetic tree analysis revealed that CKX genes were clustered into four clades, and most gene expansions originated from segmental duplications. The CKXs gene structure and motif analysis displayed remarkably well conserved among the four groups. Moreover, the cis-acting elements related to the abiotic stress, hormones, and light response were identified within the promoter regions of GhCKXs. Transcriptome data and RT-qPCR showed that GhCKX genes demonstrated higher expression levels in various tissues and were involved in cotton's abiotic stress and phytohormone response. The protein-protein interaction network indicates that the CKX family probably participated in redox regulation, including oxidoreduction or ATP levels, to mediate plant growth and development. Functionally identified via virus-induced gene silencing (VIGS) found that the GhCKX14 gene improved drought resistance by modulating the antioxidant-related activitie.
In this study, the CKX gene family members were analyzed by bioinformatics, and validates the response of GhCKX gene to various phytohormone treatment and abiotic stresses. Our findings established the foundation of GhCKXs in responding to abiotic stress and GhCKX14 in regulating drought resistance in cotton.
细胞分裂素氧化酶/脱氢酶(CKX)通过调节抗氧化酶活性,在应对非生物胁迫方面起着至关重要的作用。然而,在棉花中,CKX 基因家族的生物学功能尚未被报道。
本研究通过全基因组研究鉴定了 27 个 GhCKX,它们分布在 18 条染色体上。系统发育树分析表明,CKX 基因分为四个分支,大多数基因的扩张来源于片段重复。CKX 基因结构和基序分析显示,这四个分支之间的结构和基序高度保守。此外,在 GhCKX 启动子区域还鉴定到与非生物胁迫、激素和光响应相关的顺式作用元件。转录组数据和 RT-qPCR 显示,GhCKX 基因在各种组织中表达水平较高,参与棉花的非生物胁迫和植物激素响应。蛋白质-蛋白质相互作用网络表明,CKX 家族可能参与氧化还原调节,包括氧化还原或 ATP 水平,以调节植物的生长和发育。通过病毒诱导的基因沉默(VIGS)功能鉴定发现,GhCKX14 基因通过调节抗氧化相关活性提高了棉花的抗旱性。
本研究通过生物信息学分析了 CKX 基因家族成员,并验证了 GhCKX 基因对各种植物激素处理和非生物胁迫的响应。我们的研究结果为 GhCKXs 响应非生物胁迫和 GhCKX14 调节棉花抗旱性奠定了基础。