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一种与二硫键介导的细胞凋亡相关的配体和受体基因的新型特征,用于预测肝细胞癌的预后和免疫治疗反应。

A novel signature of the ligand and receptor genes associated with disulfidoptosis for prediction of prognosis, immunologic therapy responses in hepatocellular carcinoma.

作者信息

Fu Chong, Cheng Chang, Zhang Yanping

机构信息

Department of Gastroenterology, Anqing Municipal Hospital, 352#, Renmin Road, Anqing, Anhui, 246000, PR China.

出版信息

Heliyon. 2023 Aug 25;9(9):e19502. doi: 10.1016/j.heliyon.2023.e19502. eCollection 2023 Sep.


DOI:10.1016/j.heliyon.2023.e19502
PMID:37662746
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10472309/
Abstract

BACKGROUD: We aimed to explore the prognostic features of ligand and receptor genes associated with disulfidoptosis in hepatocellular carcinoma (HCC) and establish a risk signature utilizing these genes to predict the prognosis of HCC patients. METHODS: We used scRNA-seq data from GSE166635 to differentiate malignant cells from normal cells using "copykat".The study thoroughly examined the disparities in disulfidoptosis scores and the associated gene expressions between malignant and normal cells.We identified key ligand and receptor genes that are specific to HCC cells.Subsequently, Correlation analysis was conducted to ascertain the ligand and receptor genes associated with disulfidoptosis.We performed univariate Cox regression analysis to identify prognostic ligand and receptor genes associated with disulfidoptosis.We employed LASSO to construct a risk signature using prognostic ligand and receptor genes associated with disulfidoptosis.Lastly, we developed a nomogram model that integrates the risk signature with clinicopathological characteristics. RESULTS: Malignant cells displayed a marked increase in disulfidoptosis scores and the expression of associated genes compared to normal cells.We identified 110 receptor and ligand genes significantly associated with disulfidoptosis, and narrowed them down to create a risk signature comprising eight genes.Multivariate analysis confirmed the risk signature as an independent prognostic factor for HCC and validated its predictive value for immunotherapy outcomes.A novel nomogram was developed, incorporating stage information and the risk signature derived from disulfidoptosis-related receptor and ligand genes, demonstrating excellent predictive accuracy and reliability in HCC prognosis prediction. CONCLUSION: Risk signatures based on disulfidoptosis-associated ligand and receptor genes can effectively predict HCC prognosis and may inform immunotherapy strategies.

摘要

背景:我们旨在探索与肝细胞癌(HCC)中双硫键凋亡相关的配体和受体基因的预后特征,并利用这些基因建立一个风险特征模型来预测HCC患者的预后。 方法:我们使用来自GSE166635的单细胞RNA测序(scRNA-seq)数据,通过“copykat”将恶性细胞与正常细胞区分开来。该研究全面检查了恶性细胞与正常细胞在双硫键凋亡评分及相关基因表达方面的差异。我们鉴定出了HCC细胞特有的关键配体和受体基因。随后,进行相关性分析以确定与双硫键凋亡相关的配体和受体基因。我们进行单变量Cox回归分析,以识别与双硫键凋亡相关的预后配体和受体基因。我们使用LASSO方法,利用与双硫键凋亡相关的预后配体和受体基因构建一个风险特征模型。最后,我们开发了一个列线图模型,将风险特征模型与临床病理特征相结合。 结果:与正常细胞相比,恶性细胞的双硫键凋亡评分及相关基因的表达显著增加。我们鉴定出110个与双硫键凋亡显著相关的受体和配体基因,并将其缩小范围,创建了一个包含8个基因的风险特征模型。多变量分析证实该风险特征模型是HCC的独立预后因素,并验证了其对免疫治疗结果的预测价值。我们开发了一种新型列线图,纳入了分期信息以及源自双硫键凋亡相关受体和配体基因的风险特征模型,在HCC预后预测中显示出优异的预测准确性和可靠性。 结论:基于双硫键凋亡相关配体和受体基因的风险特征模型可以有效地预测HCC的预后,并可能为免疫治疗策略提供参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/5c428c1abc9b/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/cb033bfa4c54/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/2440c16428f7/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/0d2226c777ad/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/9ab74e3963b9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/ac8e198f0aa6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/e88b0e367423/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/22e990bd7b5c/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/5b46de7480a6/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/d834c70e8ca3/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/5c428c1abc9b/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/cb033bfa4c54/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/2440c16428f7/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/0d2226c777ad/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/9ab74e3963b9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/ac8e198f0aa6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/e88b0e367423/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/22e990bd7b5c/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/5b46de7480a6/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/d834c70e8ca3/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d01/10472309/5c428c1abc9b/gr10.jpg

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[1]
Disulfidptosis: a new target for metabolic cancer therapy.

J Exp Clin Cancer Res. 2023-4-27

[2]
A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data.

Nat Commun. 2023-2-25

[3]
Complete remissions following immunotherapy or immuno-oncology combinations in cancer patients: the MOUSEION-03 meta-analysis.

Cancer Immunol Immunother. 2023-6

[4]
Clinical practice guidelines and real-life practice in hepatocellular carcinoma: A Chinese perspective.

Clin Mol Hepatol. 2023-4

[5]
Mural Wnt/β-catenin signaling regulates Lama2 expression to promote neurovascular unit maturation.

Development. 2022-9-1

[6]
An M0 macrophage-related prognostic model for hepatocellular carcinoma.

BMC Cancer. 2022-7-19

[7]
Which role for predictors of response to immune checkpoint inhibitors in hepatocellular carcinoma?

Expert Rev Gastroenterol Hepatol. 2022-4

[8]
Global, regional and national burden of primary liver cancer by subtype.

Eur J Cancer. 2022-1

[9]
Atezolizumab-bevacizumab plus Y-90 TARE for the treatment of hepatocellular carcinoma: preclinical rationale and ongoing clinical trials.

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[10]
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