文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

通过生物信息学和实验验证鉴定与分析骨关节炎中中性粒细胞胞外陷阱相关基因

Identification and Analysis of Neutrophil Extracellular Trap-Related Genes in Osteoarthritis by Bioinformatics and Experimental Verification.

作者信息

Luan Tiankuo, Yang Xian, Kuang Ge, Wang Ting, He Jiaming, Liu Zhibo, Gong Xia, Wan Jingyuan, Li Ke

机构信息

Department of Anatomy, Chongqing Medical University, Chongqing, People's Republic of China.

Department of Pharmacology, Chongqing Medical University, Chongqing, People's Republic of China.

出版信息

J Inflamm Res. 2023 Aug 31;16:3837-3852. doi: 10.2147/JIR.S414452. eCollection 2023.


DOI:10.2147/JIR.S414452
PMID:37671131
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10476866/
Abstract

BACKGROUND: Osteoarthritis (OA) is a common joint disease with long-term pain and dysfunction that negatively affects the quality of life of patients. Neutrophil extracellular traps (NETs), consisting of DNA, proteins and cytoplasm, are released by neutrophils and play an important role in a variety of diseases. However, the relationship between OA and NETs is unclear. METHODS: In our study, we used bioinformatics to explore the relationship between OA and NETs and the potential biological markers. GSE55235, GSE55457, GSE117999 and GSE98918 were downloaded from the Gene Expression Omnibus (GEO) database for subsequent analysis.After differential analysis of OA expression matrices, intersection with NET-related genes (NRGs) was taken to identify Differentially expressed NRGs (DE-NRGs) in OA processes. Evaluation of immune cell infiltration by ssGSEA and CIBERSORT algorithm. The GSVA method was used to analyze the activity changes of Neutrophils pathway, Neutrophil degranulation and Neutrophil granule constituents pathway. RESULTS: Based on RandomForest (RF), Least Absolute Shrinkage and Selection Operator (LASSO), and Support Vector Machine-Recursive Feature Elimination (SVM-RFE) learning algorithms, five core genes (CRISPLD2, IL1B, SLC25A37, MMP9, and TLR7) were identified to construct an OA-related nomogram model for predicting OA progression. ROC curve results for these genes validated the nomogram's reliability. Correlation analysis, functional enrichment, and drug predictions were performed for the core genes. TLR7 emerged as a key focus due to its high importance ranking in RF and SVM-RFE analyses. Gene Set Enrichment Analysis (GSEA) revealed a strong association between TLR7 and the Neutrophil extracellular trap pathway. Expression of core genes was demonstrated in mice OA models and human OA samples. TLR7 expression in ATDC5 cell line was significantly higher than control after TNFα induction, along with increased IL6 and MMP13. CONCLUSION: TLR7 may be related to NETs and affects OA.

摘要

背景:骨关节炎(OA)是一种常见的关节疾病,伴有长期疼痛和功能障碍,对患者的生活质量产生负面影响。中性粒细胞胞外陷阱(NETs)由DNA、蛋白质和细胞质组成,由中性粒细胞释放,在多种疾病中起重要作用。然而,OA与NETs之间的关系尚不清楚。 方法:在我们的研究中,我们使用生物信息学来探索OA与NETs之间的关系以及潜在的生物标志物。从基因表达综合数据库(GEO)下载GSE55235、GSE55457、GSE117999和GSE98918用于后续分析。对OA表达矩阵进行差异分析后,与NET相关基因(NRGs)进行交集,以鉴定OA过程中差异表达的NRGs(DE-NRGs)。通过ssGSEA和CIBERSORT算法评估免疫细胞浸润。使用GSVA方法分析中性粒细胞途径、中性粒细胞脱颗粒和中性粒细胞颗粒成分途径的活性变化。 结果:基于随机森林(RF)、最小绝对收缩和选择算子(LASSO)以及支持向量机递归特征消除(SVM-RFE)学习算法,鉴定出五个核心基因(CRISPLD2、IL1B、SLC25A37、MMP9和TLR7),构建了一个用于预测OA进展的OA相关列线图模型。这些基因的ROC曲线结果验证了列线图的可靠性。对核心基因进行了相关性分析、功能富集和药物预测。由于TLR7在RF和SVM-RFE分析中的重要性排名较高,因此成为关键焦点。基因集富集分析(GSEA)显示TLR7与中性粒细胞胞外陷阱途径之间存在强烈关联。在小鼠OA模型和人类OA样本中证实了核心基因的表达。在TNFα诱导后,ATDC5细胞系中TLR7的表达明显高于对照组,同时IL6和MMP13增加。 结论:TLR7可能与NETs相关并影响OA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/e065c33eec24/JIR-16-3837-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/653ee4c98cb8/JIR-16-3837-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/5a89cc143fd5/JIR-16-3837-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/169e12ed6ebe/JIR-16-3837-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/bd1c7f1697ef/JIR-16-3837-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/fc500c944836/JIR-16-3837-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/eb176e989276/JIR-16-3837-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/e115ebd8ce5a/JIR-16-3837-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/e065c33eec24/JIR-16-3837-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/653ee4c98cb8/JIR-16-3837-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/5a89cc143fd5/JIR-16-3837-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/169e12ed6ebe/JIR-16-3837-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/bd1c7f1697ef/JIR-16-3837-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/fc500c944836/JIR-16-3837-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/eb176e989276/JIR-16-3837-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/e115ebd8ce5a/JIR-16-3837-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7df3/10476866/e065c33eec24/JIR-16-3837-g0008.jpg

相似文献

[1]
Identification and Analysis of Neutrophil Extracellular Trap-Related Genes in Osteoarthritis by Bioinformatics and Experimental Verification.

J Inflamm Res. 2023-8-31

[2]
Identification of key genes and their correlation with immune infiltration in osteoarthritis using integrative bioinformatics approaches and machine-learning strategies.

Medicine (Baltimore). 2023-11-17

[3]
Identification of four-gene signature to diagnose osteoarthritis through bioinformatics and machine learning methods.

Cytokine. 2023-9

[4]
Neutrophil extracellular traps and neutrophil extracellular traps-related genes are involved in new-onset atrial fibrillation in LPS-induced sepsis.

Int Immunopharmacol. 2024-9-10

[5]
Identification of ion channel-related genes as diagnostic markers and potential therapeutic targets for osteoarthritis through bioinformatics and machine learning-based approaches.

Biomarkers. 2024-7

[6]
A machine learning-based diagnostic model for myocardial infarction patients: Analysis of neutrophil extracellular traps-related genes and eQTL Mendelian randomization.

Medicine (Baltimore). 2024-3-22

[7]
Identification of Potential Therapeutic Target Genes in Osteoarthritis.

Evid Based Complement Alternat Med. 2022-8-13

[8]
Identification and validation of immune-associated NETosis subtypes and biomarkers in anti-neutrophil cytoplasmic antibody associated glomerulonephritis.

Front Immunol. 2023

[9]
[Identification of Characteristic lncRNA Molecular Markers in Osteoarthritis by Integrating GEO Database and Machine Learning Strategies and Experimental Validation].

Sichuan Da Xue Xue Bao Yi Xue Ban. 2023-9

[10]
Consensus cluster analysis of apoptosis-related genes in patients with osteoarthritis and their correlation with immune cell infiltration.

Front Immunol. 2023

引用本文的文献

[1]
Chinese Massage (Tuina) Attenuates Knee Osteoarthritis by Modulating Autophagy-Related Cytokines: A Multidisciplinary Methodological Investigation.

J Inflamm Res. 2025-8-2

[2]
Identification and analysis of neutrophil extracellular trap-related genes in periodontitis via bioinformatics and experimental verification.

BMC Oral Health. 2025-8-6

[3]
Identification of neutrophil extracellular trap-related biomarkers in ulcerative colitis based on bioinformatics and machine learning.

Front Genet. 2025-6-20

[4]
Pathway-based cancer transcriptome deciphers a high-resolution intrinsic heterogeneity within bladder cancer classification.

J Transl Med. 2025-6-17

[5]
Integrative transcriptomics and single-cell transcriptomics analyses reveal potential biomarkers and mechanisms of action in papillary thyroid carcinoma.

Front Genet. 2025-5-30

[6]
Advances in research of neutrophil extracellular trap formation in osteoarticular diseases.

World J Orthop. 2025-5-18

[7]
The role of the immune system in osteoarthritis: mechanisms, challenges and future directions.

Nat Rev Rheumatol. 2025-4

[8]
Identification and Analysis of Potential Biomarkers Associated with Neutrophil Extracellular Traps in Cervicitis.

Biochem Genet. 2024-10-17

[9]
Shared diagnostic genes and potential mechanisms between polycystic ovary syndrome and recurrent miscarriage revealed by integrated transcriptomics analysis and machine learning.

Front Endocrinol (Lausanne). 2024

[10]
Risk score constructed with neutrophil extracellular traps-related genes predicts prognosis and immune microenvironment in multiple myeloma.

Front Oncol. 2024-6-11

本文引用的文献

[1]
Comprehensive Analysis of Necroptosis Landscape in Skin Cutaneous Melanoma for Appealing its Implications in Prognosis Estimation and Microenvironment Status.

J Pers Med. 2023-1-29

[2]
PADs and NETs in digestive system: From physiology to pathology.

Front Immunol. 2023

[3]
Osteoarthritis: pathogenic signaling pathways and therapeutic targets.

Signal Transduct Target Ther. 2023-2-3

[4]
Knockdown of DAPK1 attenuates IL-1β-induced extracellular matrix degradation and inflammatory response in osteoarthritis chondrocytes via regulating the p38 MAPK-signaling pathway.

Allergol Immunopathol (Madr). 2022

[5]
The quality of physiotherapy and rehabilitation program and the effect of telerehabilitation on patients with knee osteoarthritis.

Clin Rheumatol. 2023-3

[6]
Endothelial cell protein C receptor regulates neutrophil extracellular trap-mediated rheumatoid arthritis disease progression.

Int Immunopharmacol. 2022-11

[7]
Systemic Lupus Erythematosus: New Diagnostic and Therapeutic Approaches.

Annu Rev Med. 2023-1-27

[8]
MFG-E8 Knockout Aggravated Nonalcoholic Steatohepatitis by Promoting the Activation of TLR4/NF-B Signaling in Mice.

Mediators Inflamm. 2022

[9]
A signature for pan-cancer prognosis based on neutrophil extracellular traps.

J Immunother Cancer. 2022-6

[10]
Identification of key genes associated with polycystic ovary syndrome (PCOS) and ovarian cancer using an integrated bioinformatics analysis.

J Ovarian Res. 2022-2-28

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索