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转录组分析揭示了苏格兰松树芪途径的新型调控因子。

Transcriptomic Analysis Reveals Novel Regulators of the Scots Pine Stilbene Pathway.

机构信息

Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, PO Box 27, Helsinki 00014, Finland.

State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an District, Hangzhou, Zhejiang 311300, China.

出版信息

Plant Cell Physiol. 2023 Oct 16;64(10):1204-1219. doi: 10.1093/pcp/pcad089.

DOI:10.1093/pcp/pcad089
PMID:37674261
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10579783/
Abstract

Stilbenes accumulate in Scots pine heartwood where they have important roles in protecting wood from decaying fungi. They are also part of active defense responses, and their production is induced by different (a)biotic stressors. The specific transcriptional regulators as well as the enzyme responsible for activating the stilbene precursor cinnamate in the pathway are still unknown. UV-C radiation was the first discovered artificial stress activator of the pathway. Here, we describe a large-scale transcriptomic analysis of pine needles in response to UV-C and treatment with translational inhibitors, both activating the transcription of stilbene pathway genes. We used the data to identify putative candidates for the missing CoA ligase and for pathway regulators. We further showed that the pathway is transcriptionally activated by phosphatase inhibitor, ethylene and jasmonate treatments, as in grapevine, and that the stilbene synthase promoter retains its inducibility in some of the tested conditions in Arabidopsis, a species that normally does not synthesize stilbenes. Shared features between gymnosperm and angiosperm regulation and partially retained inducibility in Arabidopsis suggest that pathway regulation occurs not only via ancient stress-response pathway(s) but also via species-specific regulators. Understanding which genes control the biosynthesis of stilbenes in Scots pine aids breeding of more resistant trees.

摘要

芪类物质在苏格兰松心材中积累,在心材中它们在保护木材免受腐朽真菌侵害方面发挥着重要作用。芪类物质也是主动防御反应的一部分,其产生受不同(生物)胁迫源的诱导。该途径中负责激活芪类前体肉桂酸的特定转录调控因子和酶仍不清楚。UV-C 辐射是该途径中第一个被发现的人工胁迫激活剂。在这里,我们描述了对松针在 UV-C 和翻译抑制剂处理下的大规模转录组分析,这两种处理均能激活芪类途径基因的转录。我们利用这些数据鉴定了缺失的 CoA 连接酶和途径调控因子的可能候选物。我们进一步表明,该途径在磷酸酶抑制剂、乙烯和茉莉酸处理下被转录激活,与葡萄藤中的情况相同,并且在拟南芥中,一些测试条件下的芪合酶启动子保留了其诱导性,而拟南芥通常不合成芪类物质。松柏类和被子植物的调控具有共同特征,并且在拟南芥中部分保留了诱导性,这表明途径调控不仅通过古老的应激反应途径发生,还通过物种特异性调控因子发生。了解哪些基因控制苏格兰松芪类物质的生物合成有助于培育更具抗性的树木。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/da81a81eb09c/pcad089f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/d1149b14c000/pcad089f1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/bce7043b9d25/pcad089f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/7b5e6e6bdaf5/pcad089f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/da81a81eb09c/pcad089f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/d1149b14c000/pcad089f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/397bff29116a/pcad089f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/fe486550cdbc/pcad089f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/7605c059c5e3/pcad089f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/bce7043b9d25/pcad089f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/7b5e6e6bdaf5/pcad089f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa37/10579783/da81a81eb09c/pcad089f7.jpg

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本文引用的文献

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Perception of solar UV radiation by plants: photoreceptors and mechanisms.植物对太阳紫外辐射的感知:光受体和机制。
Plant Physiol. 2021 Jul 6;186(3):1382-1396. doi: 10.1093/plphys/kiab162.
2
A transcriptomic view to wounding response in young Scots pine stems.从转录组学角度看幼龄苏格兰松树茎的创伤反应。
Sci Rep. 2021 Feb 12;11(1):3778. doi: 10.1038/s41598-021-82848-3.
3
Impact of Environmental Factors on Stilbene Biosynthesis.环境因素对芪生物合成的影响。
Plants (Basel). 2021 Jan 4;10(1):90. doi: 10.3390/plants10010090.
4
The WRKY53 transcription factor enhances stilbene synthesis and disease resistance by interacting with MYB14 and MYB15 in Chinese wild grape.WRKY53转录因子通过与中国野生葡萄中的MYB14和MYB15相互作用来增强芪合成和抗病性。
J Exp Bot. 2020 May 30;71(10):3211-3226. doi: 10.1093/jxb/eraa097.
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VvWRKY8 represses stilbene synthase genes through direct interaction with VvMYB14 to control resveratrol biosynthesis in grapevine.VvWRKY8 通过与 VvMYB14 的直接相互作用来抑制芪合酶基因,以控制葡萄中的白藜芦醇生物合成。
J Exp Bot. 2019 Jan 7;70(2):715-729. doi: 10.1093/jxb/ery401.
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Combinatorial Regulation of Stilbene Synthase Genes by WRKY and MYB Transcription Factors in Grapevine (Vitis vinifera L.).葡萄(Vitis vinifera L.)中 WRKY 和 MYB 转录因子对芪合酶基因的组合调控。
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The O-methyltransferase PMT2 mediates methylation of pinosylvin in Scots pine.O-甲基转移酶PMT2介导欧洲赤松中松二氢黄酮的甲基化。
New Phytol. 2017 Jun;214(4):1537-1550. doi: 10.1111/nph.14480. Epub 2017 Mar 1.
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Developmental Changes in Scots Pine Transcriptome during Heartwood Formation.欧洲赤松心材形成过程中转录组的发育变化
Plant Physiol. 2016 Nov;172(3):1403-1417. doi: 10.1104/pp.16.01082. Epub 2016 Sep 6.
9
A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation.对葡萄R2R3-MYB转录因子家族进行面向系统的分析,为芪类物质积累调控带来了新见解。
DNA Res. 2016 Oct 1;23(5):451-466. doi: 10.1093/dnares/dsw028.
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Gene regulation in the immediate-early response process.即时早期反应过程中的基因调控。
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