Sepulveda-Montaño Laura X, Galindo Johan Fabian, Kuroda Daniel G
Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States.
Department of Chemistry, Universidad Nacional de Colombia sede Bogotá, 111321 Bogotá, Colombia.
J Phys Chem B. 2023 Sep 21;127(37):7955-7963. doi: 10.1021/acs.jpcb.3c03174. Epub 2023 Sep 7.
The accurate description of large molecular systems has triggered the development of new computational methods. Due to the computational cost of modeling large systems, the methods usually require a trade-off between accuracy and speed. Therefore, benchmarking to test the accuracy and precision of the method is an important step in their development. The typical gold standard for evaluating these methods is isolated molecules, because of the low computational cost. However, the advent of high-performance computing has made it possible to benchmark computational methods using observables from more complex systems such as liquid solutions. To this end, infrared spectroscopy provides a suitable set of observables (i.e., vibrational transitions) for liquid systems. Here, IR spectroscopy observables are used to benchmark the predictions of the newly developed GFN2-xTB semiempirical method. Three different IR probes (i.e., -methylacetamide, benzonitrile, and semiheavy water) in solution are selected for this purpose. The work presented here shows that GFN2-xTB predicts central frequencies with errors of less than 10% in all probes. In addition, the method captures detailed properties of the molecular environment such as weak interactions. Finally, the GFN2-xTB correctly assesses the vibrational solvatochromism for -methylacetamide and semiheavy water but does not have the accuracy needed to properly describe benzonitrile. Overall, the results indicate not only that GFN2-xTB can be used to predict the central frequencies and their dependence on the molecular environment with reasonable accuracy but also that IR spectroscopy data of liquid solutions provide a suitable set of observables for the benchmarking of computational methods.
对大分子系统的精确描述推动了新计算方法的发展。由于对大型系统进行建模的计算成本较高,这些方法通常需要在准确性和速度之间进行权衡。因此,对方法的准确性和精度进行基准测试是其发展中的重要一步。评估这些方法的典型金标准是孤立分子,因为其计算成本较低。然而,高性能计算的出现使得使用来自更复杂系统(如液体溶液)的可观测量对计算方法进行基准测试成为可能。为此,红外光谱为液体系统提供了一组合适的可观测量(即振动跃迁)。在此,红外光谱可观测量被用于对新开发的GFN2-xTB半经验方法的预测进行基准测试。为此选择了溶液中的三种不同红外探针(即甲基乙酰胺、苯甲腈和半重水)。本文展示的工作表明,GFN2-xTB在所有探针中预测中心频率的误差小于10%。此外,该方法能够捕捉分子环境的详细性质,如弱相互作用。最后,GFN2-xTB正确评估了甲基乙酰胺和半重水的振动溶剂化显色,但在正确描述苯甲腈方面缺乏所需的准确性。总体而言,结果表明,GFN2-xTB不仅可以以合理的准确性预测中心频率及其对分子环境的依赖性,而且液体溶液的红外光谱数据为计算方法的基准测试提供了一组合适的可观测量。