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大戟科基因家族的系统发育分析及其在油桐中的表达谱

Phylogenetic Analysis of the Gene Family in Euphorbiaceae and Its Expression Profiles in Tung Tree ().

作者信息

Yang Chengbo, Yi Yaqi, Wang Jiabei, Ge Liu, Zhang Lin, Liu Meilan

机构信息

Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees, Ministry of Education, Central South University of Forestry and Technology, Changsha 410001, China.

出版信息

Plants (Basel). 2023 Sep 1;12(17):3154. doi: 10.3390/plants12173154.

Abstract

Pathogenesis-related protein-4 () is generally believed to be involved in physiological processes. However, a comprehensive investigation of this protein in tung tree () has yet to be conducted. In this study, we identified 30 genes in the genomes of Euphorbiaceae species and investigated their domain organization, evolution, promoter cis-elements, expression profiles, and expression profiles in the tung tree. Sequence and structural analyses indicated that and in the tung tree could be classified as belonging to Class II and I, respectively. Phylogenetic and Ka/Ks analyses revealed that exhibited a significantly expanded number of genes. Additionally, the analysis of promoter cis-elements suggested that two genes may play a role in the response to hormones and biotic and abiotic stress of tung trees. Furthermore, the expression patterns of genes and their responses to 6-BA, salicylic acid, and silver nitrate in inflorescence buds of tung trees were evaluated using qRT-PCR. Notably, the expression of two genes was found to be particularly high in leaves and early stages of tung seeds. These results suggest that and may have significant roles in the development of leaves and seeds in tung trees. Furthermore, these genes were found to be responsive to 6-BA, salicylic acid, and silver nitrate in the development of inflorescence buds. This research provides valuable insights for future investigation into the functions of genes in tung trees.

摘要

病程相关蛋白4()通常被认为参与生理过程。然而,尚未对油桐()中的这种蛋白质进行全面研究。在本研究中,我们在大戟科物种的基因组中鉴定出30个基因,并研究了它们的结构域组织、进化、启动子顺式元件、表达谱以及在油桐中的表达谱。序列和结构分析表明,油桐中的和可分别归类为II类和I类。系统发育和Ka/Ks分析表明,表现出显著扩展的基因数量。此外,启动子顺式元件分析表明,两个基因可能在油桐对激素以及生物和非生物胁迫的响应中发挥作用。此外,使用qRT-PCR评估了油桐花序芽中基因的表达模式及其对6-苄氨基腺嘌呤、水杨酸和硝酸银的响应。值得注意的是,发现两个基因在油桐叶片和种子早期的表达特别高。这些结果表明,和可能在油桐叶片和种子发育中发挥重要作用。此外,发现这些基因在花序芽发育中对6-苄氨基腺嘌呤、水杨酸和硝酸银有响应。本研究为未来深入研究油桐中基因的功能提供了有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6852/10490464/4bdb2731a29f/plants-12-03154-g001.jpg

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