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绘制细胞的分子图谱。

Charting the molecular landscape of the cell.

机构信息

Structural Studies Division, MRC Laboratory of Molecular Biology, CB2 0QH Cambridge, UK.

Structural Studies Division, MRC Laboratory of Molecular Biology, CB2 0QH Cambridge, UK.

出版信息

Structure. 2023 Nov 2;31(11):1297-1305. doi: 10.1016/j.str.2023.08.015. Epub 2023 Sep 11.

DOI:10.1016/j.str.2023.08.015
PMID:37699393
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7615466/
Abstract

Biological function of macromolecules is closely tied to their cellular location, as well as to interactions with other molecules within the native environment of the cell. Therefore, to obtain detailed mechanistic insights into macromolecular functionality, one of the outstanding targets for structural biology is to produce an atomic-level understanding of the cell. One structural biology technique that has already been used to directly derive atomic models of macromolecules from cells, without any additional external information, is electron cryotomography (cryoET). In this perspective article, we discuss possible routes to chart the molecular landscape of the cell by advancing cryoET imaging as well as by embedding cryoET into correlative imaging workflows.

摘要

生物大分子的生物学功能与其在细胞中的位置密切相关,也与其在细胞内天然环境中与其他分子的相互作用有关。因此,为了深入了解生物大分子的功能机制,结构生物学的一个突出目标是获得对细胞的原子水平的理解。一种已经被用于直接从细胞中获得生物大分子原子模型的结构生物学技术是电子晶体学断层扫描(cryoET)。在这篇观点文章中,我们讨论了通过推进 cryoET 成像以及将 cryoET 嵌入相关成像工作流程来绘制细胞分子图谱的可能途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca9f/7615466/100f618e9c6b/EMS192827-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca9f/7615466/100f618e9c6b/EMS192827-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca9f/7615466/100f618e9c6b/EMS192827-f001.jpg

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本文引用的文献

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Proc Natl Acad Sci U S A. 2023 Jun 6;120(23):e2301852120. doi: 10.1073/pnas.2301852120. Epub 2023 May 22.
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High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering.基于无监督深度迭代子断层图像聚类的高通量冷冻电镜结构模式挖掘。
Proc Natl Acad Sci U S A. 2023 Apr 11;120(15):e2213149120. doi: 10.1073/pnas.2213149120. Epub 2023 Apr 7.
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Cryo-electron tomography on focused ion beam lamellae transforms structural cell biology.
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Structure of the Pseudomonas aeruginosa PAO1 Type IV pilus.铜绿假单胞菌PAO1 IV型菌毛的结构
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聚焦离子束切片的冷冻电子断层成像改变了结构细胞生物学。
Nat Methods. 2023 Apr;20(4):499-511. doi: 10.1038/s41592-023-01783-5. Epub 2023 Mar 13.
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Plasma FIB milling for the determination of structures in situ.等离子体 FIB 铣削用于原位结构的测定。
Nat Commun. 2023 Feb 6;14(1):629. doi: 10.1038/s41467-023-36372-9.
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PNAS Nexus. 2022 Aug 6;1(4):pgac153. doi: 10.1093/pnasnexus/pgac153. eCollection 2022 Sep.
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Convolutional networks for supervised mining of molecular patterns within cellular context.卷积网络在细胞环境中监督挖掘分子模式。
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