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黄斑胃球菌新种,一种从变质眼膜中分离出的新型潜在产细菌素细菌。

Fundicoccus culcitae sp. nov., a novel potential bacteriocin producing bacterium isolated from a spoiled eye mask.

作者信息

Zhou Gang, Gao Lei, Fang Bao-Zhu, Wang Ying-Si, Tao Hong-Bing, Wen Xia, Wang Qian, Huang Xiao-Mo, Shi Qing-Shan, Li Wen-Jun, Xie Xiao-Bao

机构信息

Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China.

State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2023 Nov;116(11):1185-1195. doi: 10.1007/s10482-023-01866-5. Epub 2023 Sep 13.

Abstract

A Gram-positive, facultatively anaerobic, oval beaded-shape, oxidase-negative, and non-motile bacterium designated DM20194951 was isolated from a spoiled eye mask obtained from Guangdong, China. Based on the 16S rRNA gene sequence, phylogenetic analysis indicated that strain DM20194951 showed the highest sequence similarity (95.8%) to Fundicoccus ignavus WS4937. Meanwhile, strain DM20194951 could be distinguished from the type strains in the genus Fundicoccus by distinct phenotypic and genotypic traits. Strain DM20194951 grew variably with 1-2% (w/v) NaCl and tolerated pH 6.0-10.0. Growth was observed from 28 to 37 °C. The diagnostic diamino acids in the cell-wall peptidoglycan consisted of aspartic and glutamic acids as well as alanine. The predominant fatty acids were C ω9c, C, and C ω9c. In the polar lipid profile, two glycolipids, three phospholipids, one phosphatidylglycerol, and one diphosphatidylglycerol were found. No respiratory quinones were detected. The DM20194951 genome is 3.2 Mb in size and contains a G + C content of 38.1%. A gene cluster for lactococcin 972 family bacteriocin production was found in the DM20194951 genome. Based on morphological, genotypic, and phylogenetic data, strain DM20194951 should be considered to represent a novel species in the genus Fundicoccus, for which the name Fundicoccus culcitae sp. nov. is proposed with the type strain DM20194951 (= KCTC 43472 = GDMCC 1.3614).

摘要

从中国广东获取的一个变质眼罩中分离出一株革兰氏阳性、兼性厌氧、椭圆形念珠状、氧化酶阴性且无运动性的细菌,命名为DM20194951。基于16S rRNA基因序列的系统发育分析表明,菌株DM20194951与慵懒底栖球菌WS4937的序列相似性最高(95.8%)。同时,菌株DM20194951可通过独特的表型和基因型特征与底栖球菌属的模式菌株区分开来。菌株DM20194951在1 - 2%(w/v)NaCl条件下生长情况各异,耐受pH值为6.0 - 10.0。在28至37°C观察到生长。细胞壁肽聚糖中的诊断性二氨基酸由天冬氨酸、谷氨酸以及丙氨酸组成。主要脂肪酸为C ω9c、C和C ω9c。在极性脂质谱中,发现了两种糖脂、三种磷脂、一种磷脂酰甘油和一种二磷脂酰甘油。未检测到呼吸醌。DM20194951基因组大小为3.2 Mb,G + C含量为38.1%。在DM20194951基因组中发现了一个用于产972家族乳球菌素细菌素的基因簇。基于形态学、基因型和系统发育数据,菌株DM20194951应被视为代表底栖球菌属中的一个新物种,为此提出新名称慵懒底栖球菌(Fundicoccus culcitae),模式菌株为DM20194951(= KCTC 43472 = GDMCC 1.3614)。

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