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尤马鼠耳蝠基因组组装。

A genome assembly of the Yuma myotis bat, Myotis yumanensis.

机构信息

Department of Ecology and Evolutionary Biology, University of California, Los Angeles (UCLA), Los Angeles, CA, United States.

Connecticut Department of Energy and Environmental Protection, Hartford, CT, United States.

出版信息

J Hered. 2024 Feb 3;115(1):139-148. doi: 10.1093/jhered/esad053.

Abstract

The Yuma myotis bat (Myotis yumanensis) is a small vespertilionid bat and one of 52 species of new world Myotis bats in the subgenus Pizonyx. While M. yumanensis populations currently appear relatively stable, it is one of 12 bat species known or suspected to be susceptible to white-nose syndrome, the fungal disease causing declines in bat populations across North America. Only two of these 12 species have genome resources available, which limits the ability of resource managers to use genomic techniques to track the responses of bat populations to white-nose syndrome generally. Here we present the first de novo genome assembly for Yuma myotis, generated as a part of the California Conservation Genomics Project. The M. yumanensis genome was generated using a combination of PacBio HiFi long reads and Omni-C chromatin-proximity sequencing technology. This high-quality genome is one of the most complete bat assemblies available, with a contig N50 of 28.03 Mb, scaffold N50 of 99.14 Mb, and BUSCO completeness score of 93.7%. The Yuma myotis genome provides a high-quality resource that will aid in comparative genomic and evolutionary studies, as well as inform conservation management related to white-nose syndrome.

摘要

尤马氏鼠耳蝠(Myotis yumanensis)是一种小型蝙蝠,是新世界 Myotis 蝙蝠亚属 Pizonyx 中 52 种蝙蝠之一。虽然目前尤马氏鼠耳蝠的种群似乎相对稳定,但它是已知或怀疑易受白鼻综合征影响的 12 种蝙蝠之一,这种真菌病正在导致北美的蝙蝠数量下降。这 12 种蝙蝠中只有两种有基因组资源,这限制了资源管理者利用基因组技术来跟踪蝙蝠种群对白鼻综合征的一般反应。在这里,我们展示了 Yuma 鼠耳蝠的第一个从头基因组组装,这是加利福尼亚保护基因组学项目的一部分。M. yumanensis 基因组是使用 PacBio HiFi 长读长和 Omni-C 染色质邻近测序技术组合生成的。这个高质量的基因组是最完整的蝙蝠基因组之一,具有 28.03Mb 的 contig N50、99.14Mb 的 scaffold N50 和 93.7%的 BUSCO 完整性得分。尤马氏鼠耳蝠基因组提供了一个高质量的资源,将有助于比较基因组学和进化研究,并为与白鼻综合征相关的保护管理提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/009f/10838121/3c42b936a22b/esad053_fig1.jpg

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