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北方蝙蝠(Eptesicus nilssonii)的参考基因组,这是最北方的蝙蝠物种之一。

Reference genome for the Northern bat (Eptesicus nilssonii), a most northern bat species.

机构信息

BatLab Finland, Zoology unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.

Institute of Biomedicine, University of Turku, Turku, Finland.

出版信息

J Hered. 2024 Feb 3;115(1):149-154. doi: 10.1093/jhered/esad056.

Abstract

The northern bat (Eptesicus nilssonii) is the most northern bat species in the world. Its distribution covers whole Eurasia, and the species is thus well adapted to different habitat types. However, recent population declines have been reported and rapid conservation efforts are needed. Here we present a high-quality de novo genome assembly of a female northern bat from Finland (BLF_Eptnil_asm_v1.0). The assembly was generated using a combination of Pacbio and Omni-C technologies. The primary assembly comprises 726 scaffolds spanning 2.0 Gb, represented by a scaffold N50 of 102 Mb, a contig N50 of 66.2 Mb, and a BUSCO completeness score of 93.73%. Annotation of the assembly identified 20,250 genes. This genome will be an important resource for the conservation and evolutionary genomic studies especially in understanding how rapid environmental changes affect northern species.

摘要

北方蝙蝠(Eptesicus nilssonii)是世界上分布最靠北的蝙蝠物种。其分布范围覆盖整个欧亚大陆,因此该物种很好地适应了不同的生境类型。然而,最近有报道称其种群数量下降,因此需要迅速采取保护措施。本研究提供了一份来自芬兰的雌性北方蝙蝠的高质量从头基因组组装(BLF_Eptnil_asm_v1.0)。该组装是使用 Pacbio 和 Omni-C 技术的组合生成的。主要组装由 726 个支架组成,跨度为 20 亿碱基对,支架 N50 为 102Mb,串联 N50 为 66.2Mb,BUSCO 完整性评分为 93.73%。组装的注释识别出 20250 个基因。该基因组将成为保护和进化基因组研究的重要资源,特别是在了解快速的环境变化如何影响北方物种方面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36dd/10838120/2def6cadc9ba/esad056_fig1.jpg

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