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通过多元copula方法对纵向测量和生存时间进行联合建模。

Joint modelling of longitudinal measurements and survival times via a multivariate copula approach.

作者信息

Zhang Zili, Charalambous Christiana, Foster Peter

机构信息

Department of Mathematics, University of Manchester, Manchester, UK.

出版信息

J Appl Stat. 2022 Jun 2;50(13):2739-2759. doi: 10.1080/02664763.2022.2081965. eCollection 2023.

DOI:10.1080/02664763.2022.2081965
PMID:37720246
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10503460/
Abstract

Joint modelling of longitudinal and time-to-event data is usually described by a joint model which uses shared or correlated latent effects to capture associations between the two processes. Under this framework, the joint distribution of the two processes can be derived straightforwardly by assuming conditional independence given the random effects. Alternative approaches to induce interdependency into sub-models have also been considered in the literature and one such approach is using copulas to introduce non-linear correlation between the marginal distributions of the longitudinal and time-to-event processes. The multivariate Gaussian copula joint model has been proposed in the literature to fit joint data by applying a Monte Carlo expectation-maximisation algorithm. In this paper, we propose an exact likelihood estimation approach to replace the more computationally expensive Monte Carlo expectation-maximisation algorithm and we consider results based on using both the multivariate Gaussian and copula functions. We also provide a straightforward way to compute dynamic predictions of survival probabilities, showing that our proposed model is comparable in prediction performance to the shared random effects joint model.

摘要

纵向数据和事件发生时间数据的联合建模通常由一个联合模型来描述,该模型使用共享或相关的潜在效应来捕捉两个过程之间的关联。在此框架下,通过假设给定随机效应时的条件独立性,可以直接推导出两个过程的联合分布。文献中也考虑了将相依性引入子模型的替代方法,其中一种方法是使用copula函数在纵向过程和事件发生时间过程的边缘分布之间引入非线性相关性。文献中提出了多元高斯copula联合模型,通过应用蒙特卡罗期望最大化算法来拟合联合数据。在本文中,我们提出了一种精确似然估计方法来替代计算成本更高的蒙特卡罗期望最大化算法,并考虑基于使用多元高斯和copula函数的结果。我们还提供了一种直接的方法来计算生存概率的动态预测,表明我们提出的模型在预测性能上与共享随机效应联合模型相当。

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本文引用的文献

1
A copula-based approach for dynamic prediction of survival with a binary time-dependent covariate.基于Copula 的方法用于动态预测具有二元时变协变量的生存情况。
Stat Med. 2021 Oct 15;40(23):4931-4946. doi: 10.1002/sim.9102. Epub 2021 Jun 14.
2
Bayesian joint modelling of longitudinal and time to event data: a methodological review.纵向数据与事件发生时间数据的贝叶斯联合建模:方法学综述
BMC Med Res Methodol. 2020 Apr 26;20(1):94. doi: 10.1186/s12874-020-00976-2.
3
A Gaussian copula approach for dynamic prediction of survival with a longitudinal biomarker.一种基于高斯 Copula 的方法,用于对具有纵向生物标志物的生存进行动态预测。
Biostatistics. 2021 Jul 17;22(3):504-521. doi: 10.1093/biostatistics/kxz049.
4
A copula model for joint modeling of longitudinal and time-invariant mixed outcomes.一种联合建模纵向和时不变混合结局的连接函数模型。
Stat Med. 2018 Nov 30;37(27):3931-3943. doi: 10.1002/sim.7855. Epub 2018 Jul 2.
5
Time-varying copula models for longitudinal data.用于纵向数据的时变Copula模型。
Stat Interface. 2018;11(2):203-221. doi: 10.4310/SII.2018.v11.n2.a1.
6
A joint frailty-copula model between tumour progression and death for meta-analysis.用于荟萃分析的肿瘤进展与死亡之间的联合脆弱性- copula模型
Stat Methods Med Res. 2017 Dec;26(6):2649-2666. doi: 10.1177/0962280215604510. Epub 2015 Sep 18.
7
A Copula Approach to Joint Modeling of Longitudinal Measurements and Survival Times Using Monte Carlo Expectation-Maximization with Application to AIDS Studies.一种使用蒙特卡罗期望最大化方法对纵向测量和生存时间进行联合建模的Copula方法及其在艾滋病研究中的应用。
J Biopharm Stat. 2015;25(5):1077-99. doi: 10.1080/10543406.2014.971584. Epub 2014 Nov 5.
8
Dynamic predictions and prospective accuracy in joint models for longitudinal and time-to-event data.纵向数据和事件发生时间数据联合模型中的动态预测与前瞻性准确性
Biometrics. 2011 Sep;67(3):819-29. doi: 10.1111/j.1541-0420.2010.01546.x. Epub 2011 Feb 9.
9
Basic concepts and methods for joint models of longitudinal and survival data.纵向和生存数据联合模型的基本概念和方法。
J Clin Oncol. 2010 Jun 1;28(16):2796-801. doi: 10.1200/JCO.2009.25.0654. Epub 2010 May 3.
10
Joint modeling and analysis of longitudinal data with informative observation times.具有信息性观测时间的纵向数据的联合建模与分析。
Biometrics. 2009 Jun;65(2):377-84. doi: 10.1111/j.1541-0420.2008.01104.x.