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从溶液 X 射线散射中洞察结构生物物理学。

Insight into structural biophysics from solution X-ray scattering.

机构信息

Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel; The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel.

Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel.

出版信息

J Struct Biol. 2023 Dec;215(4):108029. doi: 10.1016/j.jsb.2023.108029. Epub 2023 Sep 22.

Abstract

The current challenges of structural biophysics include determining the structure of large self-assembled complexes, resolving the structure of ensembles of complex structures and their mass fraction, and unraveling the dynamic pathways and mechanisms leading to the formation of complex structures from their subunits. Modern synchrotron solution X-ray scattering data enable simultaneous high-spatial and high-temporal structural data required to address the current challenges of structural biophysics. These data are complementary to crystallography, NMR, and cryo-TEM data. However, the analysis of solution scattering data is challenging; hence many different analysis tools, listed in the SAS Portal (http://smallangle.org/), were developed. In this review, we start by briefly summarizing classical X-ray scattering analyses providing insight into fundamental structural and interaction parameters. We then describe recent developments, integrating simulations, theory, and advanced X-ray scattering modeling, providing unique insights into the structure, energetics, and dynamics of self-assembled complexes. The structural information is essential for understanding the underlying physical chemistry principles leading to self-assembled supramolecular architectures and computational structural refinement.

摘要

结构生物物理学当前面临的挑战包括确定大型自组装复合物的结构、解析复杂结构及其质量分数的结构集合、以及揭示导致复杂结构从其亚基形成的动态途径和机制。现代同步加速器溶液 X 射线散射数据能够同时提供解决结构生物物理学当前挑战所需的高空间和高时间结构数据。这些数据与晶体学、NMR 和 cryo-TEM 数据互补。然而,溶液散射数据的分析具有挑战性;因此,开发了许多不同的分析工具,列在 SAS 门户(http://smallangle.org/)中。在这篇综述中,我们首先简要总结了提供对基本结构和相互作用参数的深入了解的经典 X 射线散射分析。然后,我们描述了最近的发展,整合了模拟、理论和先进的 X 射线散射建模,为自组装复合物的结构、热力学和动力学提供了独特的见解。结构信息对于理解导致自组装超分子结构的基础物理化学原理以及计算结构精修至关重要。

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