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一种在中国感染东方环颈雉鸠()的新型致病性禽痘病毒,在基因组和进化上与全球分离的鸽痘病毒高度相近。

A novel pathogenic avipoxvirus infecting oriental turtle dove () in China shows a high genomic and evolutionary proximity with the pigeon avipoxviruses isolated globally.

作者信息

He Lei, Zhang Yuhao, Jia Yanyan, Li Zedian, Li Jing, Shang Ke, Ding Ke, Yu Haotong, Sarker Subir

机构信息

The Key Lab of Animal Disease and Public Health /Luoyang Key Laboratory of Live Carrier Biomaterial and Animal Disease Prevention and Control, Henan University of Science and Technology , Luoyang, Henan, China.

Biomedical Sciences & Molecular Biology, College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Australia.

出版信息

Microbiol Spectr. 2023 Sep 26;11(5):e0119323. doi: 10.1128/spectrum.01193-23.

Abstract

Avipoxviruses are considered as significant viral pathogen infecting a wide range of domestic and wild bird species globally, yet the majority of avipoxviruses that infect the wild bird species remain uncharacterized and their genetic diversities remain unclear. In this study, we present a novel pathogenic avipoxvirus isolated from the cutaneous pox lesions of a wild oriental turtle dove (), tentatively named as turtle dovepox virus (TDPV). The avipoxvirus was isolated by using the chorioallantoic membranes of specific pathogen-free chicken embryos which showed characteristic focal pock lesions, followed by cytopathic effects in host cells infected with oriental turtle dovepox virus. An effort in sequencing the whole genome of the poxvirus using next-generation sequencing was given, and the first whole genome sequence of TDPV was obtained. The TDPV genome was 281,386 bp in length and contained 380 predicted open reading frames (ORFs). While 336 of the predicted ORFs showed homology to other characterized avipoxviruses, the other 44 ORFs were unique. Subsequent phylogenetic analyses showed that the novel TDPV shared the closest genetic evolutionary linkage with the avipoxviruses isolated from pigeon in South Africa and India, of which the TDPV genome had the highest sequence similarity (92.5%) with South African pigeonpox virus (FeP2). In conclusion, the sequenced TDPV is significantly different from any other avipoxviruses isolated from avian or other natural host species considering genomic architecture and observed sequence similarity index. Thus, it likely should be considered a separate species. IMPORTANCE Over the past few decades, avipoxviruses have been found in a number of wild bird species including the oriental turtle dove. However, there is no whole genome sequence information on avipoxviruses isolated from oriental turtle dove, leaving us unclear about the evolutionary linkage of avipoxviruses in oriental turtle dove and other wild bird species. Thus, we believe that our study makes a significant contribution because it is the first report of the whole genome sequence of TDPV isolated from a wild oriental turtle dove, which enriches the genomic information of the genus , furthermore, contributes to tracking the genetic evolution of avipoxviruses-infected oriental turtle dove species.

摘要

禽痘病毒被认为是感染全球范围内多种家养和野生鸟类的重要病毒病原体,但大多数感染野生鸟类的禽痘病毒仍未得到充分鉴定,其遗传多样性也尚不清楚。在本研究中,我们从一只野生东方斑鸠的皮肤痘疹病变中分离出一种新型致病性禽痘病毒,暂命名为斑鸠痘病毒(TDPV)。该禽痘病毒通过使用无特定病原体鸡胚的绒毛尿囊膜进行分离,在该膜上出现了特征性的局灶性痘疱病变,随后在感染东方斑鸠痘病毒的宿主细胞中出现细胞病变效应。我们利用下一代测序技术对该痘病毒的全基因组进行了测序,并获得了TDPV的首个全基因组序列。TDPV基因组长度为281,386 bp,包含380个预测的开放阅读框(ORF)。其中336个预测的ORF与其他已鉴定的禽痘病毒具有同源性,另外44个ORF是独特的。随后的系统发育分析表明,新型TDPV与从南非和印度的鸽子中分离出的禽痘病毒具有最密切的遗传进化联系,其中TDPV基因组与南非鸽痘病毒(FeP2)的序列相似性最高(92.5%)。总之,考虑到基因组结构和观察到的序列相似性指数,测序得到的TDPV与从禽类或其他自然宿主物种中分离出的任何其他禽痘病毒都有显著差异。因此,它可能应被视为一个独立的物种。重要性在过去几十年中,已在包括东方斑鸠在内的多种野生鸟类中发现了禽痘病毒。然而,关于从东方斑鸠中分离出的禽痘病毒的全基因组序列信息尚不存在,这使我们不清楚东方斑鸠中的禽痘病毒与其他野生鸟类物种中的禽痘病毒的进化联系。因此,我们认为我们的研究做出了重大贡献,因为这是首次报道从野生东方斑鸠中分离出的TDPV的全基因组序列,这丰富了该属的基因组信息,此外,有助于追踪感染禽痘病毒的东方斑鸠物种的遗传进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6201/10581063/0bebe145db13/spectrum.01193-23.f001.jpg

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