Hubert Department of Global Health, Center for Global Safe WASH, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.
Department of Public Health Sciences, Division of Epidemiology, University of California, Davis, California, USA.
Stat Med. 2023 Dec 10;42(28):5160-5188. doi: 10.1002/sim.9906. Epub 2023 Sep 27.
This study presents a novel approach for inferring the incidence of infections by employing a quantitative model of the serum antibody response. Current methodologies often overlook the cumulative effect of an individual's infection history, making it challenging to obtain a marginal distribution for antibody concentrations. Our proposed approach leverages approximate Bayesian computation to simulate cross-sectional antibody responses and compare these to observed data, factoring in the impact of repeated infections. We then assess the empirical distribution functions of the simulated and observed antibody data utilizing Kolmogorov deviance, thereby incorporating a goodness-of-fit check. This new method not only matches the computational efficiency of preceding likelihood-based analyses but also facilitates the joint estimation of antibody noise parameters. The results affirm that the predictions generated by our within-host model closely align with the observed distributions from cross-sectional samples of a well-characterized population. Our findings mirror those of likelihood-based methodologies in scenarios of low infection pressure, such as the transmission of pertussis in Europe. However, our simulations reveal that in settings of higher infection pressure, likelihood-based approaches tend to underestimate the force of infection. Thus, our novel methodology presents significant advancements in estimating infection incidence, thereby enhancing our understanding of disease dynamics in the field of epidemiology.
本研究提出了一种新的方法,通过血清抗体反应的定量模型来推断感染的发生率。当前的方法往往忽略了个体感染史的累积效应,因此难以获得抗体浓度的边际分布。我们提出的方法利用近似贝叶斯计算来模拟横断面抗体反应,并将其与观察数据进行比较,同时考虑到重复感染的影响。然后,我们利用柯尔莫哥洛夫离差评估模拟和观察到的抗体数据的经验分布函数,从而进行拟合优度检验。这种新方法不仅匹配了基于似然的先前分析的计算效率,还促进了抗体噪声参数的联合估计。研究结果证实,我们的体内模型生成的预测与来自特征明确人群的横断面样本的观察分布非常吻合。在低感染压力的情况下,如欧洲百日咳的传播,我们的发现与基于似然的方法一致。然而,我们的模拟表明,在感染压力较高的情况下,基于似然的方法往往低估了感染强度。因此,我们的新方法在估计感染发生率方面有显著的进步,从而增强了我们对流行病学领域疾病动态的理解。