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该属中两个线粒体基因组的特征分析与比较

Characterization and Comparison of the Two Mitochondrial Genomes in the Genus .

作者信息

Wang Yan-Mei, Zhang Chi-Ying, Luo Si-Te, Ding Guo-Hua, Qiao Fen

机构信息

Laboratory of Amphibian Diversity Investigation, College of Ecology, Lishui University, Lishui 323000, China.

College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China.

出版信息

Genes (Basel). 2023 Sep 11;14(9):1786. doi: 10.3390/genes14091786.

Abstract

The mitochondrial genome (mitogenome) possesses several invaluable attributes, including limited recombination, maternal inheritance, a fast evolutionary rate, compact size, and relatively conserved gene arrangement, all of which make it particularly useful for applications in phylogenetic reconstruction, population genetics, and evolutionary research. In this study, we aimed to determine the complete mitogenomes of two morphologically similar species ( and ) using next-generation sequencing. The entire circular mitogenome was successfully identified, with a length of 19,395 bp for and 17,833 bp for . The mitogenomes of both species contained 37 genes, including 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and one control region; mitogenome size varied predominantly with the length of the control region. The two synonymous codon usages in 13 PCGs showed that T and A were used more frequently than G and C. The ratios of non-synonymous to synonymous substitutions of all 13 PCGs were <1 in the species, indicating that the PCGs were under purifying selection. Finally, phylogenetic relationship analyses suggested that and were classified in the group. Our study provides valuable reference material for the taxonomy of the genus .

摘要

线粒体基因组(线粒体基因组)具有几个非常有价值的特性,包括有限的重组、母系遗传、快速的进化速率、紧凑的大小和相对保守的基因排列,所有这些特性使其在系统发育重建、群体遗传学和进化研究中的应用特别有用。在本研究中,我们旨在使用下一代测序确定两个形态相似物种(和)的完整线粒体基因组。成功鉴定出整个环状线粒体基因组,的长度为19,395 bp,的长度为17,833 bp。两个物种的线粒体基因组都包含37个基因,包括13个蛋白质编码基因(PCG)、两个核糖体RNA基因、22个转移RNA基因和一个控制区;线粒体基因组大小主要随控制区的长度而变化。13个PCG中的两种同义密码子使用情况表明,T和A的使用频率高于G和C。在物种中,所有13个PCG的非同义替换与同义替换的比率均<1,这表明PCG处于纯化选择之下。最后,系统发育关系分析表明,和被归类为组。我们的研究为该属的分类学提供了有价值的参考材料。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7922/10530863/5296d269a34d/genes-14-01786-g001.jpg

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