新型北极菌株的分类鉴定及应对过氧化氢胁迫的全球转录组分析。

Taxonomic Identification of the Arctic Strain Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress.

机构信息

First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China.

College of Marine Life Sciences, Ocean University of China, Qingdao 266100, China.

出版信息

Int J Mol Sci. 2023 Sep 11;24(18):13943. doi: 10.3390/ijms241813943.

Abstract

Microorganisms living in polar regions rely on specialized mechanisms to adapt to extreme environments. The study of their stress adaptation mechanisms is a hot topic in international microbiology research. In this study, a bacterial strain (Arc9.136) isolated from Arctic marine sediments was selected to implement polyphasic taxonomic identification based on factors such as genetic characteristics, physiological and biochemical properties, and chemical composition. The results showed that strain Arc9.136 is classified to the genus , for which the name sp. nov. is proposed. The ozone hole over the Arctic leads to increased ultraviolet (UV-B) radiation, and low temperatures lead to increased dissolved content in seawater. These extreme environmental conditions result in oxidative stress, inducing a strong response in microorganisms. Based on the functional classification of significantly differentially expressed genes under 1 mM HO stress, we suspect that Arc9.136 may respond to oxidative stress through the following strategies: (1) efficient utilization of various carbon sources to improve carbohydrate transport and metabolism; (2) altering ion transport and metabolism by decreasing the uptake of divalent iron (to avoid the Fenton reaction) and increasing the utilization of trivalent iron (to maintain intracellular iron homeostasis); (3) increasing the level of cell replication, DNA repair, and defense functions, repairing DNA damage caused by HO; (4) and changing the composition of lipids in the cell membrane and reducing the sensitivity of lipid peroxidation. This study provides insights into the stress resistance mechanisms of microorganisms in extreme environments and highlights the potential for developing low-temperature active microbial resources.

摘要

生活在极地的微生物依赖于专门的机制来适应极端环境。研究它们的应激适应机制是国际微生物学研究的一个热点。在本研究中,从北极海洋沉积物中分离到一株细菌(Arc9.136),基于遗传特征、生理生化特性和化学成分等因素,对其进行多相分类鉴定。结果表明,菌株 Arc9.136 属于 属,因此提出了一个新种,命名为 sp. nov.。北极上空的臭氧空洞导致紫外线(UV-B)辐射增加,而低温导致海水中溶解物含量增加。这些极端环境条件导致氧化应激,诱导微生物产生强烈反应。根据 1mM HO 胁迫下差异表达基因的功能分类,我们怀疑 Arc9.136 可能通过以下策略来应对氧化应激:(1)有效利用各种碳源来提高碳水化合物的运输和代谢;(2)通过减少二价铁(以避免 Fenton 反应)的摄取和增加三价铁的利用(以维持细胞内铁平衡)来改变离子运输和代谢;(3)增加细胞复制、DNA 修复和防御功能的水平,修复 HO 引起的 DNA 损伤;(4)改变细胞膜中脂质的组成,降低脂质过氧化的敏感性。本研究为深入了解极端环境中微生物的应激抗性机制提供了新视角,并强调了开发低温活性微生物资源的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/764b/10531085/79d01ad0ec55/ijms-24-13943-g001.jpg

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