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聚丁二酸丁二醇酯塑料球形体研究对海洋弧菌新型塑料降解酶基因发现的启示。

A lesson from polybutylene succinate plastisphere to the discovery of novel plastic degrading enzyme genes in marine vibrios.

机构信息

Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.

Medical Core Project Dept, Mitsubishi Chemical Corporation, Yokohama, Japan.

出版信息

Environ Microbiol. 2023 Dec;25(12):2834-2850. doi: 10.1111/1462-2920.16512. Epub 2023 Sep 29.

DOI:10.1111/1462-2920.16512
PMID:37775475
Abstract

Polybutylene succinate (PBS) is an eco-friendly green plastic. However, PBS was shown as being non-biodegradable in marine environments, and up until now, only a limited number of PBS-degrading marine microbes have been discovered. We first set up in vitro PBS- and PBSA (polybutylene succinate adipate)-plastispheres to characterize novel PBS-degrading marine microbes. Microbial growth and oxygen consumption were observed in both PBS- and PBSA-plastispheres enriched with natural seawater collected from Usujiri, Hokkaido, Japan, and Vibrionaceae and Pseudoalteromonadaceae were significantly enriched on these films. Further gene identification indicated that vibrios belonging to the Gazogenes clade possess genes related to a PBS degrading enzyme (PBSase). The PBS degradation assay for six Gazogenes clade vibrios identified Vibrio ruber, Vibrio rhizosphaerae, and Vibrio spartinae as being capable of degrading PBS. We further identified the gene responsible for PBSase from the type strain of V. ruber, and the purified recombinant vibrio PBSase was found to have low-temperature adaptation and was active under high NaCl concentrations. We also provided docking models between the vibrio PBSase and PBS and PBSA units to show how vibrio PBSase interacts with each substrate compared to the Acidovorax PBSase. These results could contribute to a more sustainable society through further utilization of PBS in marine environments and plastic recycling.

摘要

聚丁二酸丁二醇酯(PBS)是一种环保型绿色塑料。然而,PBS 在海洋环境中被证明是不可生物降解的,到目前为止,只发现了有限数量的能够降解 PBS 的海洋微生物。我们首先在体外建立 PBS 和聚丁二酸丁二醇酯己二酸酯(PBSA)塑料球,以表征新型 PBS 降解海洋微生物。在含有来自日本北海道Usujiri 的天然海水的 PBS 和 PBSA 塑料球中观察到微生物生长和耗氧量,并且这些薄膜上明显富集了弧菌科和假交替单胞菌科。进一步的基因鉴定表明,属于 Gazogenes 进化枝的弧菌具有与 PBS 降解酶(PBSase)相关的基因。对六种 Gazogenes 进化枝弧菌的 PBS 降解实验鉴定出红色弧菌、根瘤菌和 Spartinae 弧菌能够降解 PBS。我们进一步从红色弧菌的模式株中鉴定出负责 PBSase 的基因,并且发现纯化的重组弧菌 PBSase具有低温适应能力,并在高 NaCl 浓度下具有活性。我们还提供了弧菌 PBSase 和 PBS 和 PBSA 单元之间的对接模型,以显示与 Acidovorax PBSase 相比,弧菌 PBSase 如何与每个底物相互作用。这些结果可以通过在海洋环境中进一步利用 PBS 和塑料回收来为更可持续的社会做出贡献。

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