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新属名. 新种名,一种来自酸性地热环境的嗜热嗜酸甲烷氧化细菌,以及家族新科名. 新目名的描述。

gen. nov., sp. nov., a thermoacidophilic methane-oxidizing bacterium from an acidic geothermal environment, and descriptions of the family fam. nov. and order ord. nov.

机构信息

Department of Biological Sciences and Biotechnology, Chungbuk National University, 1 Chungdae-ro, Seowon-Gu, Cheongju 28644, Republic of Korea.

Department of Biology, University of Naples "Federico II", Complesso Universitario Di Monte S. Angelo, Via Cupa Nuova Cinthia 21, 80126, Naples, Italy.

出版信息

Int J Syst Evol Microbiol. 2023 Oct;73(10). doi: 10.1099/ijsem.0.006085.

Abstract

Strain IT6, a thermoacidophilic and facultative methane-oxidizing bacterium, was isolated from a mud-water mixture collected from Pisciarelli hot spring in Pozzuoli, Italy. The novel strain is white when grown in liquid or solid media and forms Gram-negative rod-shaped, non-flagellated, non-motile cells. It conserves energy by aerobically oxidizing methane and hydrogen while deriving carbon from carbon dioxide fixation. Strain IT6 had three complete operons encoding particulate methane monooxygenase and genes encoding group 1d and 3b [NiFe] hydrogenases. Simple carbon-carbon substrates such as ethanol, 2-propanol, acetone, acetol and propane-1,2-diol were used as alternative electron donors and carbon sources. Optimal growth occurred at 50-55°C and between pH 2.0-3.0. The major fatty acids were C, C anteiso, C iso, C and C, and the main polar lipids were phosphatidylethanolamine, aminophospholipid, phosphatidylglycerol, diphosphatidylglycerol, some unidentified phospholipids and glycolipids, and other unknown polar lipids. Strain IT6 has a genome size of 2.19 Mbp and a G+C content of 40.70 mol%. Relative evolutionary divergence using 120 conserved single-copy marker genes (bac120) and phylogenetic analyses based on bac120 and 16S rRNA gene sequences showed that strain IT6 is affiliated with members of the proposed order '' of the class in the phylum . It shared a 16S rRNA gene sequence identity of >96 % with cultivated isolates in the genus '' of the family '', which are thermoacidophilic methane-oxidizing bacteria. ' sp.' Phi (100 %), ' V4 (99.02 %) and ' sp.' RTK17.1 (99.02 %) were its closest relatives. Its physiological and genomic properties were consistent with those of other isolated '' species. Based on these results, we propose the name gen. nov., sp. nov. to accommodate strain IT6 (=KCTC 92103=JCM 39288). We also formally propose that the names fam. nov. and ord. nov. to accommodate the genus gen. nov.

摘要

菌株 IT6 是一种嗜热嗜酸、兼性产甲烷氧化细菌,从意大利波佐利皮西亚雷利温泉的泥浆水混合物中分离得到。该新菌株在液体或固体培养基中生长时呈白色,形成革兰氏阴性、杆状、无鞭毛、不运动的细胞。它通过好氧氧化甲烷和氢气来保存能量,同时从二氧化碳固定中获取碳。菌株 IT6 有三个完整的编码颗粒状甲烷单加氧酶的操纵子,以及编码第 1d 和 3b [NiFe]氢化酶的基因。简单的碳-碳底物,如乙醇、2-丙醇、丙酮、乙酰醇和丙烷-1,2-二醇,被用作替代电子供体和碳源。最佳生长条件为 50-55°C 和 pH 2.0-3.0。主要脂肪酸为 C 、 C anteiso 、 C iso 、 C 和 C ,主要极性脂为磷脂酰乙醇胺、氨基磷脂、磷脂酰甘油、双磷脂酰甘油、一些未鉴定的磷脂和糖脂以及其他未知的极性脂。菌株 IT6 的基因组大小为 2.19 Mbp,G+C 含量为 40.70 mol%。使用 120 个保守的单拷贝标记基因(bac120)进行相对进化分歧分析以及基于 bac120 和 16S rRNA 基因序列的系统发育分析表明,菌株 IT6 与提议的目“”的成员有关,在门“”的类“”中。它与科“”属中已培养的菌株“”的 16S rRNA 基因序列同源性>96%,这些菌株是嗜热嗜酸产甲烷氧化细菌。“sp. Phi (100%)”、“V4 (99.02%)”和“sp. RTK17.1 (99.02%)”是其最接近的亲缘关系。其生理和基因组特性与其他分离的“”物种一致。基于这些结果,我们建议使用名称“”来容纳菌株 IT6(=KCTC 92103=JCM 39288)。我们还正式提议使用名称“”和“”来容纳属“”。

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