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提议建立新属Parashewanella,以容纳弯曲帕拉希瓦内拉新种(Parashewanella curva sp. nov.)和海绵帕拉希瓦内拉新组合(Parashewanella spongiae comb. nov.),它们属于希瓦氏菌科。

Proposal of Parashewanella gen. nov. to accommodate Parashewanella curva sp. nov. and Parashewanella spongiae comb. nov. in the Shewanellaceae.

作者信息

Xu Shuailiang, Yu Kefu, Su Hongfei, Chen Biao, Huang Wen, Liang Jiayuan, Wang Yinghui, Wang Guanghua

机构信息

1​Guangxi Key Laboratory on the Study of Coral Reefs in the South China Sea, Nanning 530004, PR China.

2​Coral Reef Research Center of China, Guangxi University, Nanning 530004, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 May;69(5):1259-1264. doi: 10.1099/ijsem.0.003298. Epub 2019 Feb 20.

Abstract

A Gram-stain-negative, non-spore-forming, motile, aerobic, curved rod shaped bacterium, designed strain C51, was isolated from coral (genus Porites) sampled at Weizhou Island, China. The optimal growth occurred in 2-3 % NaCl (w/v), at 25 °C and pH 8. Phylogenetic analyses based on the 16S rRNA gene, the gyrB gene and the Up-to-date Bacterial Core Gene set (92 genes) indicated that strain C51 forms a stable cluster with Shewanella spongiae KCTC 22492, and had 94 % 16S rRNA gene similarity to its closest type strain S. spongiae KCTC 22492. The only detected respiratory quinone was Q-8 and it could not produce menaquinone. The genome DNA G+C content was 40.1 mol%. The major cellular fatty acids were iso-C11:0 3-OH, iso-C15:0, C16:0, C16:1ω7c/ω6c, C18:0 and iso-C13:0 3-OH. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, three unidentified aminolipids and three unidentified polar lipids. Its low genome DNA G+C content, lack of an aminolipid and a difference in its substrate oxidation ability indicated that strain C51 should represent a new species. Furthermore, its distinct phylogeny, Shewanella-specific FISH probe SHEW227 mismatch, lower cellular G+C content and inability to produce menaquinones indicated that the C51 clade should represent a new genus in the Shewanellaceae, for which the name Parashewanella gen. nov. is proposed, the type species is Parashewanella spongiae comb. nov., and another species is Parashewanella curva sp. nov. The type strains of Parashewanella spongiae and Parashewanella curva are HJ039 (=KCTC 22492=KCCM 42304=JCM 13830) and C51 (=MCCC 1K03463=KCTC 62318), respectively.

摘要

从中国涠洲岛采集的多孔珊瑚(Porites属)中分离出一株革兰氏阴性、不形成芽孢、具运动性、需氧、弯曲杆状的细菌,命名为菌株C51。其最适生长条件为2-3%(w/v)NaCl、25 °C和pH 8。基于16S rRNA基因、gyrB基因和最新细菌核心基因集(92个基因)的系统发育分析表明,菌株C51与海绵希瓦氏菌KCTC 22492形成一个稳定的聚类群,与其最接近的模式菌株海绵希瓦氏菌KCTC 22492的16S rRNA基因相似度为94%。唯一检测到的呼吸醌为Q-8,且不能产生甲基萘醌。基因组DNA G+C含量为40.1 mol%。主要细胞脂肪酸为异-C11:0 3-OH、异-C15:0、C16:0、C16:1ω7c/ω6c、C18:0和异-C13:0 3-OH。主要极性脂为磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油、三种未鉴定的氨基脂和三种未鉴定的极性脂。其低基因组DNA G+C含量、缺乏氨基脂以及底物氧化能力的差异表明菌株C51应代表一个新物种。此外,其独特的系统发育、希瓦氏菌特异性FISH探针SHEW227错配、较低的细胞G+C含量以及不能产生甲基萘醌表明C51进化枝应代表希瓦氏菌科中的一个新属,为此提出新属名Parashewanella gen. nov.,模式种为Parashewanella spongiae comb. nov.,另一个种为Parashewanella curva sp. nov.。Parashewanella spongiae和Parashewanella curva的模式菌株分别为HJ039(=KCTC 22492=KCCM 42304=JCM 13830)和C51(=MCCC 1K03463=KCTC 62318)。

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