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翻译组学用于探索肿瘤微环境中免疫细胞的动态差异。

Translatomics to explore dynamic differences in immunocytes in the tumor microenvironment.

作者信息

Guo Yilin, Yan Shiqi, Zhang Wenling

机构信息

Department of Laboratory Medicine, The Third Xiangya Hospital, Central South University, Changsha, Hunan 410013, P.R. China.

Department of Laboratory Medicine, Xiangya School of Medicine, Central South University, Changsha, Hunan 410013, P.R. China.

出版信息

Mol Ther Nucleic Acids. 2023 Sep 20;34:102037. doi: 10.1016/j.omtn.2023.102037. eCollection 2023 Dec 12.

DOI:10.1016/j.omtn.2023.102037
PMID:37808922
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10551571/
Abstract

Protein is an essential component of all living organisms and is primarily responsible for life activities; furthermore, its synthesis depends on a highly complex and accurate translation system. For proteins, the regulation at the translation level exceeds the sum of that during transcription, mRNA degradation, and protein degradation. Therefore, it is necessary to study regulation at the translation level. Imbalance in the translation process may change the cellular landscape, which not only leads to the occurrence, maintenance, progression, invasion, and metastasis of cancer but also affects the function of immune cells and changes the tumor microenvironment. Detailed analysis of transcriptional and protein atlases is needed to better understand how gene translation occurs. However, a more rigorous direct correlation between mRNA and protein levels is needed, which somewhat limits further studies. Translatomics is a technique for capturing and sequencing ribosome-related mRNAs that can effectively identify translation changes caused by ribosome stagnation and local translation abnormalities during cancer occurrence to further understand the changes in the translation landscape of cancer cells themselves and immune cells in the tumor microenvironment, which can provide new strategies and directions for tumor treatment.

摘要

蛋白质是所有生物体的重要组成部分,主要负责生命活动;此外,其合成依赖于高度复杂且精确的翻译系统。对于蛋白质而言,翻译水平的调控超过了转录、mRNA降解和蛋白质降解过程中的调控之和。因此,有必要研究翻译水平的调控。翻译过程中的失衡可能会改变细胞格局,这不仅会导致癌症的发生、维持、进展、侵袭和转移,还会影响免疫细胞的功能并改变肿瘤微环境。需要对转录图谱和蛋白质图谱进行详细分析,以更好地理解基因翻译是如何发生的。然而,需要mRNA水平与蛋白质水平之间更严格的直接关联,这在一定程度上限制了进一步的研究。翻译组学是一种捕获和测序核糖体相关mRNA的技术,它可以有效识别癌症发生过程中核糖体停滞和局部翻译异常所导致的翻译变化,从而进一步了解癌细胞自身以及肿瘤微环境中免疫细胞的翻译格局变化,这可为肿瘤治疗提供新的策略和方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/ffe9d16cd0d7/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/c0108df4a318/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/5b8a14abfb67/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/022ef9ef0c6b/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/ffe9d16cd0d7/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/c0108df4a318/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/5b8a14abfb67/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/022ef9ef0c6b/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3208/10551571/ffe9d16cd0d7/gr3.jpg

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本文引用的文献

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B-Cell Infiltrate in the Tumor Microenvironment Is Associated With Improved Survival in Resected Lung Adenocarcinoma.肿瘤微环境中的B细胞浸润与肺腺癌切除术后生存率提高相关。
JTO Clin Res Rep. 2023 May 18;4(7):100527. doi: 10.1016/j.jtocrr.2023.100527. eCollection 2023 Jul.
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Single-cell RNA sequencing reveals tumor immune microenvironment in human hypopharygeal squamous cell carcinoma and lymphatic metastasis.单细胞 RNA 测序揭示了人下咽鳞癌及其淋巴转移中的肿瘤免疫微环境。
Front Immunol. 2023 Jul 12;14:1168191. doi: 10.3389/fimmu.2023.1168191. eCollection 2023.
3
Prmt5 deficient mouse B cells display RNA processing complexity and slower colorectal tumor progression.
Prmt5 缺陷型小鼠 B 细胞表现出 RNA 加工复杂性和更缓慢的结直肠肿瘤进展。
Eur J Immunol. 2023 Oct;53(10):e2250226. doi: 10.1002/eji.202250226. Epub 2023 Jul 13.
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Single-cell RNA sequencing reveals cell subpopulations in the tumor microenvironment contributing to hepatocellular carcinoma.单细胞RNA测序揭示了肿瘤微环境中对肝细胞癌有影响的细胞亚群。
Front Cell Dev Biol. 2023 Jun 2;11:1194199. doi: 10.3389/fcell.2023.1194199. eCollection 2023.
5
Rfoot-seq: Transcriptomic RNase Footprinting for Mapping Stable RNA-Protein Complexes and Rapid Ribosome Profiling.Rfoot-seq:用于绘制稳定 RNA-蛋白质复合物和快速核糖体分析的转录组 RNase 足迹
Curr Protoc. 2023 Apr;3(4):e761. doi: 10.1002/cpz1.761.
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Dynamic mitochondrial transcription and translation in B cells control germinal center entry and lymphomagenesis.动态的线粒体转录和翻译在 B 细胞中控制生发中心进入和淋巴瘤发生。
Nat Immunol. 2023 Jun;24(6):991-1006. doi: 10.1038/s41590-023-01484-3. Epub 2023 Apr 24.
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Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing.单细胞 RNA 测序揭示新辅助免疫治疗后非小细胞肺癌肿瘤微环境的重塑。
Genome Med. 2023 Mar 3;15(1):14. doi: 10.1186/s13073-023-01164-9.
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J Clin Invest. 2023 Jan 17;133(2):e160025. doi: 10.1172/JCI160025.
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