• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

β-变形菌纲代表性菌株LSUCC0117的基因组序列草图

Draft genome sequence of the BAL58 Betaproteobacteria representative strain LSUCC0117.

作者信息

Stapelfeldt Holly R D, Lanclos V Celeste, Henson Michael W, Thrash J Cameron

机构信息

Department of Biological Sciences, University of Southern California , Los Angeles, California, USA.

Department of Geophysical Sciences, University of Chicago , Chicago, Illinois, USA.

出版信息

Microbiol Resour Announc. 2023 Nov 16;12(11):e0062023. doi: 10.1128/MRA.00620-23. Epub 2023 Oct 13.

DOI:10.1128/MRA.00620-23
PMID:37830797
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10652963/
Abstract

Here, we present the draft genome sequence of strain LSUCC0117, a representative of the abundant aquatic BAL58 Betaproteobacteria group which we isolated from a coastal site in the northern Gulf of Mexico. The genome is estimated at over 99% complete, with a genome size of 2,687,225 bp.

摘要

在此,我们展示了菌株LSUCC0117的基因组序列草图,该菌株是我们从墨西哥湾北部沿海地点分离出的丰富水生BAL58β-变形菌组的代表。该基因组估计完成度超过99%,基因组大小为2,687,225 bp。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a76/10652963/8a64f10b52b9/mra.00620-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a76/10652963/8a64f10b52b9/mra.00620-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a76/10652963/8a64f10b52b9/mra.00620-23.f001.jpg

相似文献

1
Draft genome sequence of the BAL58 Betaproteobacteria representative strain LSUCC0117.β-变形菌纲代表性菌株LSUCC0117的基因组序列草图
Microbiol Resour Announc. 2023 Nov 16;12(11):e0062023. doi: 10.1128/MRA.00620-23. Epub 2023 Oct 13.
2
Draft Genome Sequence of Novel Coastal Bacterium LSUCC0115 from the MWH-UniPo Clade, Order , Class .来自MWH-UniPo进化枝、目、纲的新型沿海细菌LSUCC0115的基因组序列草图
Microbiol Resour Announc. 2020 Jan 9;9(2):e01492-19. doi: 10.1128/MRA.01492-19.
3
Draft Genome Sequence of Strain LSUCC0135, an Early Diverging Member of the Order Methylophilales in the Phylum Betaproteobacteria.嗜甲基菌目菌株LSUCC0135的基因组序列草图,嗜甲基菌目是β-变形菌门中早期分化的成员。
Genome Announc. 2016 Nov 3;4(6):e01231-16. doi: 10.1128/genomeA.01231-16.
4
Complete Genome Sequence of sp. Strain LSUCC0821, Isolated from the Coastal Gulf of Mexico.从墨西哥湾沿岸分离出的sp.菌株LSUCC0821的全基因组序列
Microbiol Resour Announc. 2020 Dec 3;9(49):e01035-20. doi: 10.1128/MRA.01035-20.
5
Draft Genome Sequence of Strain LSUCC0112, a Gulf of Mexico Representative of the Oligotrophic Marine .墨西哥湾贫营养海洋菌株LSUCC0112的基因组序列草图
Microbiol Resour Announc. 2019 Jul 3;8(27):e00521-19. doi: 10.1128/MRA.00521-19.
6
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome.海洋α-变形杆菌菌株HIMB11的基因组序列草图,它是玫瑰杆菌进化枝中一个独特谱系的首个培养代表,拥有异常小的基因组。
Stand Genomic Sci. 2014 Mar 15;9(3):632-45. doi: 10.4056/sigs.4998989. eCollection 2014 Jun 15.
7
Draft genome sequence of sp. GOM6, a lipolytic strain isolated from seawater of the Gulf of Mexico.从墨西哥湾海水中分离出的脂肪分解菌株GOM6的基因组序列草图
Microbiol Resour Announc. 2023 Sep 19;12(9):e0034823. doi: 10.1128/MRA.00348-23. Epub 2023 Jul 20.
8
Draft Genome Sequence of sp. Strain CWR15, Isolated from a Gulf of Mexico Sponge.从墨西哥湾海绵中分离出的sp. 菌株CWR15的基因组序列草图
Microbiol Resour Announc. 2020 Mar 26;9(13):e00176-20. doi: 10.1128/MRA.00176-20.
9
Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary.甲基营养菌属菌株T29的基因组序列草图,该菌株是从匈牙利分离出的一种新型燃料含氧化合物降解细菌。
Stand Genomic Sci. 2015 Jul 19;10:39. doi: 10.1186/s40793-015-0023-z. eCollection 2015.
10
Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.海洋α-变形菌纲SAR116进化枝的培养代表菌株HIMB100的基因组序列草图
Stand Genomic Sci. 2011 Dec 31;5(3):269-78. doi: 10.4056/sigs.1854551. Epub 2011 Dec 23.

本文引用的文献

1
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning.CheckM2:一种使用机器学习快速、可扩展且准确评估微生物基因组质量的工具。
Nat Methods. 2023 Aug;20(8):1203-1212. doi: 10.1038/s41592-023-01940-w. Epub 2023 Jul 27.
2
GTDB-Tk v2: memory friendly classification with the genome taxonomy database.GTDB-Tk v2:使用基因组分类数据库实现内存友好的分类。
Bioinformatics. 2022 Nov 30;38(23):5315-5316. doi: 10.1093/bioinformatics/btac672.
3
sparse-growth-curve: a Computational Pipeline for Parsing Cellular Growth Curves with Low Temporal Resolution.
稀疏生长曲线:一种用于解析低时间分辨率细胞生长曲线的计算流程。
Microbiol Resour Announc. 2021 May 13;10(19):e00296-21. doi: 10.1128/MRA.00296-21.
4
Expanding the Diversity of Bacterioplankton Isolates and Modeling Isolation Efficacy with Large-Scale Dilution-to-Extinction Cultivation.采用大规模稀释-灭绝培养法扩展细菌浮游生物分离物的多样性并建立分离效果模型。
Appl Environ Microbiol. 2020 Aug 18;86(17). doi: 10.1128/AEM.00943-20.
5
Using SPAdes De Novo Assembler.使用 SPAdes 从头组装。
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
6
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico.人工海水培养基有助于培养来自墨西哥湾的大多数微生物成员。
mSphere. 2016 Apr 27;1(2). doi: 10.1128/mSphere.00028-16. eCollection 2016 Mar-Apr.
8
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon:一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
9
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
10
Hydrogenophaga electricum sp. nov., isolated from anodic biofilms of an acetate-fed microbial fuel cell.嗜电氢噬胞菌新种,从以乙酸盐为食的微生物燃料电池的阳极生物膜中分离得到。
J Gen Appl Microbiol. 2013;59(4):261-6. doi: 10.2323/jgam.59.261.