Białobrzewski Michał K, Klepka Barbara P, Michaś Agnieszka, Cieplak-Rotowska Maja K, Staszałek Zuzanna, Niedźwiecka Anna
Laboratory of Biological Physics, Institute of Physics, Polish Academy of Sciences, Aleja Lotnikow 32/46, PL-02668, Warsaw, Poland.
Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, PL-02093, Warsaw, Poland.
Eur Biophys J. 2023 Oct;52(6-7):607-618. doi: 10.1007/s00249-023-01683-8. Epub 2023 Oct 13.
Intrinsically disordered proteins (IDPs) form an important class of biomolecules regulating biological processes in higher organisms. The lack of a fixed spatial structure facilitates them to perform their regulatory functions and allows the efficiency of biochemical reactions to be controlled by temperature and the cellular environment. From the biophysical point of view, IDPs are biopolymers with a broad configuration state space and their actual conformation depends on non-covalent interactions of its amino acid side chain groups at given temperature and chemical conditions. Thus, the hydrodynamic radius (R) of an IDP of a given polymer length (N) is a sequence- and environment-dependent variable. We have reviewed the literature values of hydrodynamic radii of IDPs determined experimentally by SEC, AUC, PFG NMR, DLS, and FCS, and complement them with our FCS results obtained for a series of protein fragments involved in the regulation of human gene expression. The data collected herein show that the values of hydrodynamic radii of IDPs can span the full space between the folded globular and denatured proteins in the R(N) diagram.
内在无序蛋白(IDP)构成了一类重要的生物分子,在高等生物中调节生物过程。缺乏固定的空间结构使它们能够执行其调节功能,并使生化反应的效率受温度和细胞环境的控制。从生物物理学角度来看,IDP是具有广泛构象状态空间的生物聚合物,其实际构象取决于给定温度和化学条件下其氨基酸侧链基团的非共价相互作用。因此,给定聚合物长度(N)的IDP的流体动力学半径(R)是一个依赖于序列和环境的变量。我们回顾了通过尺寸排阻色谱(SEC)、分析型超速离心(AUC)、脉冲场梯度核磁共振(PFG NMR)、动态光散射(DLS)和荧光相关光谱(FCS)实验测定的IDP流体动力学半径的文献值,并用我们对一系列参与人类基因表达调控的蛋白质片段获得的FCS结果对其进行补充。本文收集的数据表明,在R(N)图中,IDP的流体动力学半径值可以涵盖折叠球状蛋白和变性蛋白之间的整个空间。