Grupo de Investigación en Biodiversidad, Zoonosis y Salud Pública (GIBCIZ), Instituto de Salud Pública y Zoonosis (CIZ), Facultad de Ciencias Químicas (FCQ), Universidad Central del Ecuador, Quito 170521, Ecuador.
CEQUINOR (UNLP-CONICET, CCT-La Plata, Associated with CICBA), Universidad Nacional de La Plata, La Plata 1900, Argentina.
Molecules. 2023 Oct 4;28(19):6929. doi: 10.3390/molecules28196929.
Antibiotic resistance is a global threat to public health, and the search for new antibacterial therapies is a current research priority. The aim of this in silico study was to test nine new fluoroquinolones previously designed with potential leishmanicidal activity against , , , , and , all of which are considered by the World Health Organization to resistant pathogens of global concern, through molecular docking and molecular dynamics (MD) simulations using wild-type (WT) and mutant-type (MT) DNA gyrases as biological targets. Our results showed that compound had the best binding energy with the active site of in both molecular docking and molecular dynamics simulations. Compound interacted with residues of quinolone resistance-determining region (QRDR) in GyrA and GyrB chains, which are important to enzyme activity and through which it could block DNA replication. In addition to compound , compound also showed a good affinity for DNA gyrase. Thus, these newly designed molecules could have antibacterial activity against Gram-negative microorganisms. These findings represent a promising starting point for further investigation through in vitro assays, which can validate the hypothesis and potentially facilitate the development of novel antibiotic drugs.
抗生素耐药性是全球公共卫生的一个威胁,寻找新的抗菌治疗方法是当前的一个研究重点。本计算机模拟研究旨在测试九种新的氟喹诺酮类化合物,这些化合物先前被设计具有潜在的杀利什曼原虫活性,针对 、 、 、 和 ,所有这些都被世界卫生组织认为是具有全球关注的耐药病原体,通过使用野生型 (WT) 和突变型 (MT) DNA 回旋酶作为生物靶标进行分子对接和分子动力学 (MD) 模拟。我们的结果表明,化合物 在分子对接和分子动力学模拟中都与 的活性位点具有最佳的结合能。化合物 与 GyrA 和 GyrB 链中的喹诺酮耐药决定区 (QRDR) 残基相互作用,这些残基对酶活性很重要,它可以通过这些残基阻止 DNA 复制。除了化合物 之外,化合物 也对 DNA 回旋酶表现出良好的亲和力。因此,这些新设计的分子可能对革兰氏阴性微生物具有抗菌活性。这些发现为通过体外试验进一步研究提供了一个有希望的起点,可以验证假设并有可能促进新型抗生素药物的开发。