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TOP2A 和 CDC6 在肝癌中的作用。

Role of TOP2A and CDC6 in liver cancer.

机构信息

Department of Digestive, Beijing Rehabilitation Hospital Affiliated to Capital Medical University, Badachu Xixia Village, Shijingshan District, Beijing, P.R. China.

Department of Hepatobiliary Surgery, The Fourth Affiliated Hospital of Hebei Medical University, Shijiazhuang, Hebei, P.R. China.

出版信息

Medicine (Baltimore). 2023 Oct 20;102(42):e35604. doi: 10.1097/MD.0000000000035604.

Abstract

Hepatocellular carcinoma (HCC) is one of the most common malignant tumors with high mortality worldwide, which is characterized by aggressive growth and metastasis. However, the relationship between TOP2A and CDC6 and HCC remains unclear. GSE121248 and GSE101728 profiles for liver cancer were downloaded from the gene expression omnibus database generated using GPL21047and GPL570. Differentially expressed genes (DEGs) were screened and weighted gene co-expression network analysis was performed. The construction and analysis of protein-protein interaction network, functional enrichment analysis, gene set enrichment analysis. Gene expression heat map was drawn and survival analysis was performed. Comparative toxicogenomics database analysis were performed to find the disease most related to the core gene. TargetScan was used to screen miRNAs regulating central DEGs. 885 DEGs were identified. According to gene ontology analysis, they were mainly enriched in organic acid metabolism process, metabolic pathway, p53 signal pathway and PPAR signal pathway. The enrichment items are similar to the GOKEGG enrichment items of differentially expressed genes, mainly in the process of organic acid metabolism, p53 signal pathway and PPAR signal pathway. In the enrichment project of metascape, gene ontology has PIDPLK1 pathway, mitotic cell cycle, tumor retinoblastoma gene. The construction and analysis of protein-protein interaction network obtained 10 core genes (TOP2A, CDK1, ASPM, RACGAP1, ZWINT, CDC6, AURKA, NCAPG, BUB1B, CCNB1), and found that these core genes were highly expressed in tumor tissues and low in normal tissues. Comparative toxicogenomics database analysis showed that 10 genes (TOP2A, CDK1, ASPM, RACGAP1, ZWINT, CDC6, AURKA, NCAPG, BUB1B, CCNB1) were related to necrosis, inflammation, HCC, liver cirrhosis, and adenoid cystic carcinoma. TOP2A and CDC6 are highly expressed in liver cancer, which may become molecular targets for early diagnosis and precise treatment.

摘要

肝细胞癌(HCC)是全球死亡率最高的最常见恶性肿瘤之一,其特征为侵袭性生长和转移。然而,TOP2A 和 CDC6 与 HCC 的关系尚不清楚。从基因表达综合数据库中下载了用于 GPL21047 和 GPL570 的肝癌 GSE121248 和 GSE101728 谱。筛选差异表达基因(DEGs)并进行加权基因共表达网络分析。构建和分析蛋白质-蛋白质相互作用网络,进行功能富集分析、基因集富集分析。绘制基因表达热图并进行生存分析。对比较毒理学基因组数据库进行分析,以找到与核心基因最相关的疾病。使用 TargetScan 筛选调节中心 DEGs 的 miRNA。鉴定出 885 个 DEG。根据基因本体论分析,它们主要富集在有机酸代谢过程、代谢途径、p53 信号通路和 PPAR 信号通路中。富集项与差异表达基因的 GOKEGG 富集项相似,主要在有机酸代谢、p53 信号通路和 PPAR 信号通路过程中。在 metascape 的富集项目中,基因本体论有 PIDPLK1 途径、有丝分裂细胞周期、肿瘤视网膜母细胞瘤基因。构建和分析蛋白质-蛋白质相互作用网络得到 10 个核心基因(TOP2A、CDK1、ASPM、RACGAP1、ZWINT、CDC6、AURKA、NCAPG、BUB1B、CCNB1),发现这些核心基因在肿瘤组织中高表达,在正常组织中低表达。比较毒理学基因组数据库分析表明,TOP2A、CDK1、ASPM、RACGAP1、ZWINT、CDC6、AURKA、NCAPG、BUB1B、CCNB1 这 10 个基因与坏死、炎症、HCC、肝硬化和腺样囊性癌有关。TOP2A 和 CDC6 在肝癌中高表达,可能成为早期诊断和精准治疗的分子靶标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c754/10589547/8e9f04987a9b/medi-102-e35604-g001.jpg

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