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位置,位置,还是位置:利用空间转录组学绘制淋巴瘤肿瘤微环境图谱

Location, location, location: mapping the lymphoma tumor microenvironment using spatial transcriptomics.

作者信息

Pickard Keir, Stephenson Emily, Mitchell Alex, Jardine Laura, Bacon Chris M

机构信息

Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.

Haematology Department, Freeman Hospital, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom.

出版信息

Front Oncol. 2023 Oct 4;13:1258245. doi: 10.3389/fonc.2023.1258245. eCollection 2023.

Abstract

Lymphomas are a heterogenous group of lymphoid neoplasms with a wide variety of clinical presentations. Response to treatment and prognosis differs both between and within lymphoma subtypes. Improved molecular and genetic profiling has increased our understanding of the factors which drive these clinical dynamics. Immune and non-immune cells within the lymphoma tumor microenvironment (TME) can both play a key role in antitumor immune responses and conversely also support lymphoma growth and survival. A deeper understanding of the lymphoma TME would identify key lymphoma and immune cell interactions which could be disrupted for therapeutic benefit. Single cell RNA sequencing studies have provided a more comprehensive description of the TME, however these studies are limited in that they lack spatial context. Spatial transcriptomics provides a comprehensive analysis of gene expression within tissue and is an attractive technique in lymphoma to both disentangle the complex interactions between lymphoma and TME cells and improve understanding of how lymphoma cells evade the host immune response. This article summarizes current spatial transcriptomic technologies and their use in lymphoma research to date. The resulting data has already enriched our knowledge of the mechanisms and clinical impact of an immunosuppressive TME in lymphoma and the accrual of further studies will provide a fundamental step in the march towards personalized medicine.

摘要

淋巴瘤是一组异质性的淋巴样肿瘤,临床表现多种多样。不同淋巴瘤亚型之间以及同一亚型内部对治疗的反应和预后都有所不同。分子和基因谱分析的改进增进了我们对驱动这些临床动态变化因素的理解。淋巴瘤肿瘤微环境(TME)中的免疫细胞和非免疫细胞在抗肿瘤免疫反应中都可发挥关键作用,反之也支持淋巴瘤的生长和存活。更深入地了解淋巴瘤TME将有助于确定关键的淋巴瘤与免疫细胞相互作用,而干扰这些相互作用可能带来治疗益处。单细胞RNA测序研究对TME进行了更全面的描述,然而这些研究存在局限性,即缺乏空间背景信息。空间转录组学可对组织内的基因表达进行全面分析,在淋巴瘤研究中是一项很有吸引力的技术,既能理清淋巴瘤与TME细胞之间复杂的相互作用,又能增进对淋巴瘤细胞如何逃避宿主免疫反应的理解。本文总结了当前的空间转录组学技术及其迄今在淋巴瘤研究中的应用。所得数据已经丰富了我们对淋巴瘤中免疫抑制性TME的机制和临床影响的认识,进一步研究的积累将为迈向个性化医疗迈出重要的一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/50b0/10586500/f7096ddc3225/fonc-13-1258245-g001.jpg

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