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主宰欧亚草原的禾本科牧草的基因组进化和初步选育。

Genome evolution and initial breeding of the Triticeae grass dominating the Eurasian Steppe.

机构信息

State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.

School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding 071000, China.

出版信息

Proc Natl Acad Sci U S A. 2023 Oct 31;120(44):e2308984120. doi: 10.1073/pnas.2308984120. Epub 2023 Oct 24.

DOI:10.1073/pnas.2308984120
PMID:37874858
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10623014/
Abstract

, a dominant perennial grass in the Eurasian Steppe, is well known for its remarkable adaptability and forage quality. Hardly any breeding has been done on the grass, limiting its potential in ecological restoration and forage productivity. To enable genetic improvement of the untapped, important species, we obtained a 7.85-Gb high-quality genome of with a particularly long contig N50 (318.49 Mb). Its allotetraploid genome is estimated to originate 5.29 million years ago (MYA) from a cross between the Ns-subgenome relating to and the unknown Xm-subgenome. Multiple bursts of transposons during 0.433-1.842 MYA after genome allopolyploidization, which involved predominantly the Tekay and Angela of LTR retrotransposons, contributed to its genome expansion and complexity. With the genome resource available, we successfully developed a genetic transformation system as well as the gene-editing pipeline in . We knocked out the monocot-specific miR528 using CRISPR/Cas9, resulting in the improvement of yield-related traits with increases in the tiller number and growth rate. Our research provides valuable genomic resources for Triticeae evolutionary studies and presents a conceptual framework illustrating the utilization of genomic information and genome editing to accelerate the improvement of wild with features such as polyploidization and self-incompatibility.

摘要

偃麦草是欧亚草原中一种优势多年生禾草,以其极强的适应性和饲用品质而闻名。该物种的选育工作几乎从未开展过,限制了其在生态恢复和饲草生产力方面的潜力。为了实现对这种未充分开发的重要物种的遗传改良,我们获得了高质量的 7.85Gb 基因组,其最长的 contig N50(318.49Mb)特别长。其异源四倍体基因组估计起源于 529 万年前(MYA),是由与 相关的 Ns 亚基因组和未知的 Xm 亚基因组杂交形成的。在基因组异源多倍化后的 0.433-1.842 MYA 期间,转座子发生了多次爆发,主要涉及 LTR 反转录转座子的 Tekay 和 Angela,导致其基因组扩张和复杂化。利用获得的基因组资源,我们成功地在 中开发了遗传转化系统和基因编辑技术。我们利用 CRISPR/Cas9 敲除了单子叶植物特异性的 miR528,从而提高了分蘖数和生长速率等与产量相关的特性。我们的研究为小麦族进化研究提供了有价值的基因组资源,并提出了一个概念框架,说明了如何利用基因组信息和基因编辑来加速具有多倍化和自交不亲和性等特征的野生偃麦草的改良。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/9ffdea4c94a7/pnas.2308984120fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/15ab9a8898b4/pnas.2308984120fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/49046d677fdf/pnas.2308984120fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/6878a97bce02/pnas.2308984120fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/9ffdea4c94a7/pnas.2308984120fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/15ab9a8898b4/pnas.2308984120fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/49046d677fdf/pnas.2308984120fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/6878a97bce02/pnas.2308984120fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec3/10623014/9ffdea4c94a7/pnas.2308984120fig04.jpg

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