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[糖蛋白Ib与细丝蛋白之间力调节相互作用的分子动力学模拟]

[Molecular dynamics simulation of force-regulated interaction between glycoprotein Ib and filamin].

作者信息

Tao Rencai, Xie Xubin, Wu Jianhua, Fang Ying

机构信息

School of Bioscience & Bioengineering, South China University of Technology, Guangzhou 510006, P. R. China.

出版信息

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2023 Oct 25;40(5):876-885. doi: 10.7507/1001-5515.202302043.

DOI:10.7507/1001-5515.202302043
PMID:37879916
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10600417/
Abstract

In resting platelets, the 17 domain of filamin a (FLNa17) constitutively binds to the platelet membrane glycoprotein Ibα (GPIbα) at its cytoplasmic tail (GPIbα-CT) and inhibits the downstream signal activation, while the binding of ligand and blood shear force can activate platelets. To imitate the pull force transmitted from the extracellular ligand of GPIbα and the lateral tension from platelet cytoskeleton deformation, two pulling modes were applied on the GPIbα-CT/FLNa17 complex, and the molecular dynamics simulation method was used to explore the mechanical regulation on the affinity and mechanical stability of the complex. In this study, at first, nine pairs of key hydrogen bonds on the interface between GPIbα-CT and FLNa17 were identified, which was the basis for maintaining the complex structural stability. Secondly, it was found that these hydrogen bonding networks would be broken down and lead to the dissociation of FLNa17 from GPIbα-CT only under the axial pull force; but, under the lateral tension, the secondary structures at both terminals of FLNa17 would unfold to protect the interface of the GPIbα-CT/FLNa17 complex from mechanical damage. In the range of 0~40 pN, the increase of pull force promoted outward-rotation of the nitrogen atom of the 563 phenylalanine (PHE -N) at GPIbα-CT and the dissociation of the complex. This study for the first time revealed that the extracellular ligand-transmitted axial force could more effectively relieve the inhibition of FLNa17 on the downstream signal of GPIbα than pure mechanical tension at the atomic level, and would be useful for further understanding the platelet intracellular force-regulated signal pathway.

摘要

在静息血小板中,细丝蛋白A的17结构域(FLNa17)在其细胞质尾部(GPIbα-CT)与血小板膜糖蛋白Ibα(GPIbα)组成性结合,并抑制下游信号激活,而配体结合和血流剪切力可激活血小板。为模拟从GPIbα的细胞外配体传递的拉力以及血小板细胞骨架变形产生的侧向张力,对GPIbα-CT/FLNa17复合物施加了两种拉伸模式,并采用分子动力学模拟方法探究对该复合物亲和力和机械稳定性的力学调控。在本研究中,首先,确定了GPIbα-CT与FLNa17界面上的九对关键氢键,这是维持复合物结构稳定性的基础。其次,发现这些氢键网络仅在轴向拉力作用下会被破坏并导致FLNa17从GPIbα-CT上解离;但是,在侧向张力作用下,FLNa17两端的二级结构会展开以保护GPIbα-CT/FLNa17复合物的界面免受机械损伤。在0~40皮牛范围内,拉力增加促使GPIbα-CT处563位苯丙氨酸的氮原子(PHE-N)向外旋转并导致复合物解离。本研究首次在原子水平揭示,细胞外配体传递的轴向力比纯机械张力能更有效地解除FLNa17对GPIbα下游信号的抑制,这将有助于进一步理解血小板细胞内力调节信号通路。

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本文引用的文献

1
Tension Enhances the Binding Affinity of β1 Integrin by Clamping Talin Tightly: An Insight from Steered Molecular Dynamics Simulations.张力通过紧密夹紧紧β1 整合素来增强其结合亲和力:来自导向分子动力学模拟的新见解。
J Chem Inf Model. 2022 Nov 28;62(22):5688-5698. doi: 10.1021/acs.jcim.2c00963. Epub 2022 Oct 21.
2
Force-enhanced biophysical connectivity of platelet β3 integrin signaling through Talin is predicted by steered molecular dynamics simulations.定向分子动力学模拟预测血小板 β3 整合素信号传导通过 Talin 的力增强生物物理连通性。
Sci Rep. 2022 Mar 17;12(1):4605. doi: 10.1038/s41598-022-08554-w.
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Activation of von Willebrand factor via mechanical unfolding of its discontinuous autoinhibitory module.通过机械展开其不连续的自动抑制模块来激活血管性血友病因子。
Nat Commun. 2021 Apr 21;12(1):2360. doi: 10.1038/s41467-021-22634-x.
4
The 14-3-3ζ-c-Src-integrin-β3 complex is vital for platelet activation.14-3-3ζ-c-Src-整合素-β3 复合物对血小板激活至关重要。
Blood. 2020 Aug 20;136(8):974-988. doi: 10.1182/blood.2019002314.
5
Filamin A: key actor in platelet biology.细丝蛋白 A:血小板生物学的关键因素。
Blood. 2019 Oct 17;134(16):1279-1288. doi: 10.1182/blood.2019000014.
6
An integrin αβ intermediate affinity state mediates biomechanical platelet aggregation.整合素 αβ 中间亲和力状态介导了生物力学血小板聚集。
Nat Mater. 2019 Jul;18(7):760-769. doi: 10.1038/s41563-019-0323-6. Epub 2019 Mar 25.
7
[Investigation of the influence of mechanical signals on the structure of CD44/FERM complex via molecular dynamics simulation].通过分子动力学模拟研究机械信号对CD44/FERM复合体结构的影响
Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2018 Aug 25;35(4):501-508. doi: 10.7507/1001-5515.201801051.
8
Force loading explains spatial sensing of ligands by cells.力加载解释了细胞对配体的空间感知。
Nature. 2017 Dec 14;552(7684):219-224. doi: 10.1038/nature24662. Epub 2017 Dec 6.
9
Flow-induced elongation of von Willebrand factor precedes tension-dependent activation.血流诱导的血管性血友病因子伸长先于张力依赖性激活。
Nat Commun. 2017 Aug 23;8(1):324. doi: 10.1038/s41467-017-00230-2.
10
Sensing the mechano-chemical properties of the extracellular matrix.感知细胞外基质的机械化学性质。
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