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基于免疫信息学方法开发针对 的多表位亚单位疫苗。

Development of multi-epitope based subunit vaccine against using immunoinformatics approach.

机构信息

Department of Bioinformatics, Pondicherry University, Puducherry, India.

Department of Predictive Toxicology, Korea Institute of Toxicology (KIT), Republic of Korea.

出版信息

J Biomol Struct Dyn. 2024;42(22):12365-12384. doi: 10.1080/07391102.2023.2270065. Epub 2023 Oct 25.

Abstract

The etiological agent of tuberculosis (TB), , is a deadly pathogen that adapts to thrive within the host. Since 2020, the COVID-19 pandemic has had colossal health, societal, and economic consequences, which have affected the reporting of new incidences and mortality cases of TB. As per the WHO 2022 report, 10.6 million people were diagnosed with TB, and 1.6 million died worldwide. The increase in resistant strains of tuberculosis is making it more burdensome to reach the End TB strategy. A reliable and efficient TB vaccine that may avert both primary infection and recurrence of latent TB in adults and adolescents is of the utmost importance. In this study, we used computational techniques to predict the ability of HLA molecules to display epitopes for six TB proteins (PPE68, PE_PGRS17, EspC, LDT4, RpfD, and RpfC) to design the multi-epitope subunit vaccine. From the aimed proteins, the potential B-cell, helper T lymphocyte (HTL), and cytotoxic T lymphocyte (CTL) epitopes were predicted and linked together with LPA adjuvant, and the vaccine was designed. The vaccine's physicochemical analysis demonstrates that it is non-allergic, non-toxic, and antigenic. Then, the vaccine structure was predicted, improved, and verified to yield the optimal structure. The developed vaccine's binding mechanism with distinct immunogenic receptors (Tlr2 and MHC-II) was assessed utilizing molecular docking. The molecular dynamic simulation and MMPBSA analysis were performed to comprehend the complexes' dynamics and stability. The immune simulation was utilized to anticipate the vaccine's immunogenic attributes. cloning was employed to demonstrate the efficient expression of the designed vaccine in as a host. Moreover, and animal testing is required to determine the efficacy of the developed vaccine.Communicated by Ramaswamy H. Sarma.

摘要

结核分枝杆菌(TB)的病原体 是一种致命的病原体,能够在宿主体内适应并茁壮成长。自 2020 年以来,COVID-19 大流行对健康、社会和经济造成了巨大影响,这影响了结核病新发病例和死亡病例的报告。根据世界卫生组织 2022 年的报告,全球有 1060 万人被诊断患有结核病,有 160 万人死亡。结核分枝杆菌耐药株的增加使得实现终止结核病战略更加困难。一种可靠有效的结核分枝杆菌疫苗,可以预防成人和青少年原发性感染和潜伏性结核分枝杆菌复发,这一点至关重要。在这项研究中,我们使用计算技术来预测 HLA 分子对六种 TB 蛋白(PPE68、PE_PGRS17、EspC、LDT4、RpfD 和 RpfC)的表位呈现能力,以设计多表位亚单位疫苗。从目标蛋白中预测了潜在的 B 细胞、辅助性 T 淋巴细胞(HTL)和细胞毒性 T 淋巴细胞(CTL)表位,并与 LPA 佐剂连接在一起,设计了疫苗。疫苗的物理化学分析表明,它无变应原性、无毒、抗原性。然后,预测、改进和验证了疫苗的结构,以获得最佳结构。利用分子对接评估了所开发疫苗与不同免疫原性受体(Tlr2 和 MHC-II)的结合机制。进行了分子动力学模拟和 MMPBSA 分析,以了解复合物的动力学和稳定性。进行了免疫模拟,以预测疫苗的免疫原性特征。使用 克隆技术在宿主 中证明了设计疫苗的高效表达。此外,还需要进行 和 动物试验来确定所开发疫苗的疗效。通讯作者为 Ramaswamy H. Sarma。

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