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转录组分析揭示了甜椒对缺磷的响应机制。

Transcriptomic Analysis Reveals the Response Mechanisms of Bell Pepper ( to Phosphorus Deficiency.

作者信息

Salazar-Gutiérrez Daizha, Cruz-Mendívil Abraham, Villicaña Claudia, Heredia José Basilio, Lightbourn-Rojas Luis Alberto, León-Félix Josefina

机构信息

Molecular Biology and Functional Genomics, Centro de Investigación en Alimentación y Desarrollo (CIAD), Culiacán 80110, Sinaloa, Mexico.

CONAHCYT-Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Guasave 81101, Sinaloa, Mexico.

出版信息

Metabolites. 2023 Oct 13;13(10):1078. doi: 10.3390/metabo13101078.

DOI:10.3390/metabo13101078
PMID:37887403
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10609356/
Abstract

Phosphorus (P) is an important nutritional element needed by plants. Roots obtain P as inorganic phosphate (Pi), mostly in HPO form. It is vital for plants to have a sufficient supply of Pi since it participates in important processes like photosynthesis, energy transfer, and protein activation, among others. The physicochemical properties and the organic material usually make Pi bioavailability in soil low, causing crops and undomesticated plants to experience variations in accessibility or even a persistent phosphate limitation. In this study, transcriptome data from pepper roots under low-Pi stress was analyzed in order to identify Pi starvation-responsive genes and their relationship with metabolic pathways and functions. Transcriptome data were obtained from pepper roots with Pi deficiency by RNASeq and analyzed with bioinformatic tools. A total of 97 differentially expressed genes (DEGs) were identified; Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment revealed that metabolic pathways, such as porphyrin and chlorophyll metabolism, were down-regulated, and galactose and fatty acid metabolism were up-regulated. The results indicate that bell pepper follows diverse processes related to low Pi tolerance regulation, such as the remobilization of internal Pi, alternative metabolic pathways to generate energy, and regulators of root development.

摘要

磷(P)是植物所需的一种重要营养元素。根系以无机磷酸盐(Pi)的形式获取磷,主要是HPO形式。植物有充足的Pi供应至关重要,因为它参与光合作用、能量转移和蛋白质激活等重要过程。土壤中Pi的生物有效性通常受物理化学性质和有机物质的影响而较低,导致作物和野生植物在获取磷方面存在差异,甚至长期受到磷限制。在本研究中,分析了低磷胁迫下辣椒根系的转录组数据,以鉴定磷饥饿响应基因及其与代谢途径和功能的关系。通过RNA测序从缺磷的辣椒根系中获得转录组数据,并用生物信息学工具进行分析。共鉴定出97个差异表达基因(DEG);京都基因与基因组百科全书(KEGG)富集分析表明,卟啉和叶绿素代谢等代谢途径下调,半乳糖和脂肪酸代谢上调。结果表明,甜椒遵循多种与低磷耐受性调节相关的过程,如内部磷的重新分配、产生能量的替代代谢途径以及根系发育的调节因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/f280de0249b0/metabolites-13-01078-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/b4abe90dd695/metabolites-13-01078-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/cae619966775/metabolites-13-01078-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/f280de0249b0/metabolites-13-01078-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/b4abe90dd695/metabolites-13-01078-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/cae619966775/metabolites-13-01078-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d364/10609356/f280de0249b0/metabolites-13-01078-g003.jpg

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