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用于动态时间调控的级联电路构建及其在聚羟基丁酸酯生产中的应用。

Construction of cascade circuits for dynamic temporal regulation and its application to PHB production.

作者信息

Li Xiaomeng, Qi Qingsheng, Liang Quanfeng

机构信息

State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, People's Republic of China.

The Second Laboratory of Lanzhou Institute of Biological Products Co., Ltd, Lanzhou, 730046, People's Republic of China.

出版信息

Biotechnol Biofuels Bioprod. 2023 Oct 27;16(1):158. doi: 10.1186/s13068-023-02416-x.

Abstract

BACKGROUND

To maximize the production capacity and yield of microbial cell factories, metabolic pathways are generally modified with dynamic regulatory strategies, which can effectively solve the problems of low biological yield, growth retardation and metabolic imbalance. However, the strategy of dynamic regulating multiple genes in different time and order is still not effectively solved. Based on the quorum-sensing (QS) system and the principle of cascade regulation, we studied the sequence and time interval of gene expression in metabolic pathways.

RESULTS

We designed and constructed a self-induced dynamic temporal regulatory cascade circuit in Escherichia coli using the QS system and dual regulatory protein cascade and found that the time intervals of the cascade circuits based on the Tra, Las system and the Lux, Tra system reached 200 min and 150 min, respectively. Furthermore, a dynamic temporal regulatory cascade circuit library with time intervals ranging from 110 to 310 min was obtained based on this circuit using promoter engineering and ribosome binding site replacement, which can provide more selective synthetic biology universal components for metabolic applications. Finally, poly-β-hydroxybutyric acid (PHB) production was taken as an example to demonstrate the performance of the cascade circuit library. The content of PHB increased 1.5-fold. Moreover, circuits with different time intervals and different expression orders were found to have different potentials for application in PHB production, and the preferred time-interval circuit strain C2-max was identified by screening.

CONCLUSIONS

The self-induced dynamic temporal regulation cascade circuit library can enable the expression of target genes with sequential changes at different times, effectively solving the balance problem between cell growth and product synthesis in two-stage fermentation and expanding the application of dynamic regulatory strategies in the field of metabolic engineering.

摘要

背景

为了最大限度地提高微生物细胞工厂的生产能力和产量,通常采用动态调控策略对代谢途径进行修饰,这可以有效解决生物产量低、生长迟缓及代谢失衡等问题。然而,动态调控不同时间和顺序的多个基因的策略仍未得到有效解决。基于群体感应(QS)系统和级联调控原理,我们研究了代谢途径中基因表达的顺序和时间间隔。

结果

我们利用QS系统和双调控蛋白级联在大肠杆菌中设计并构建了一个自诱导动态时间调控级联电路,发现基于Tra、Las系统和Lux、Tra系统的级联电路的时间间隔分别达到了200分钟和150分钟。此外,基于该电路,通过启动子工程和核糖体结合位点替换,获得了一个时间间隔为110至310分钟的动态时间调控级联电路库,可为代谢应用提供更多具有选择性的合成生物学通用元件。最后,以聚-β-羟基丁酸(PHB)生产为例,展示了级联电路库的性能。PHB含量增加了1.5倍。此外,发现具有不同时间间隔和不同表达顺序的电路在PHB生产中的应用潜力不同,并通过筛选确定了优选的时间间隔电路菌株C2-max。

结论

自诱导动态时间调控级联电路库能够使目标基因在不同时间顺序变化地表达,有效解决两阶段发酵中细胞生长与产物合成之间的平衡问题,拓展了动态调控策略在代谢工程领域的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10e6/10604415/68383f1e3d64/13068_2023_2416_Fig1_HTML.jpg

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