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从沿海沉积物中分离出的一种新型专性化能自养硫氧化细菌的生理和基因组特征

Physiological and Genomic Characterization of a Novel Obligately Chemolithoautotrophic, Sulfur-Oxidizing Bacterium of Genus Isolated from a Coastal Sediment.

作者信息

Gao Yu, Zhu Han, Wang Jun, Shao Zongze, Wei Shiping, Wang Ruicheng, Cheng Ruolin, Jiang Lijing

机构信息

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China.

State Key Laboratory Breeding Base of Marine Genetic Resources, Xiamen 361005, China.

出版信息

Microorganisms. 2023 Oct 15;11(10):2569. doi: 10.3390/microorganisms11102569.

DOI:10.3390/microorganisms11102569
PMID:37894227
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10608990/
Abstract

species, belonging to the family in the phylum are usually detected in various sulfur-rich marine environments. However, only a few bacteria of have been isolated, and their ecological roles and environmental adaptations still require further understanding. Here, we report a novel strain, XGS-01, isolated from a coastal sediment, which belongs to genus and is most closely related to MAS2, with a sequence similarity of 97.8%. Phenotypic characterization showed that XGS-01 is a mesophilic, sulfur-oxidizing, obligate chemolithoautotrophy, with carbon dioxide as its sole carbon source and oxygen as its sole electron acceptor. During thiosulfate oxidation, strain XGS-01 can produce extracellular sulfur of elemental α-S, as confirmed via scanning electron microscopy and Raman spectromicroscopy. Polyphasic taxonomy results indicate that strain XGS-01 represents a novel species of the genus , named sp. nov. Genomic analysis confirmed that XGS-01 performed thiosulfate oxidation through a multienzyme complex, and harbored and genes for sulfide oxidation. Comparative genomics analysis among five available genomes from species revealed that carbon fixation via the oxidation of reduced-sulfur compounds coupled with oxygen reduction is conserved metabolic pathways among members of genus .

摘要

属于门中 科的物种通常在各种富含硫的海洋环境中被检测到。然而,仅有少数该属的细菌被分离出来,它们的生态作用和环境适应性仍需要进一步了解。在此,我们报告了从沿海沉积物中分离出的一株新菌株XGS-01,它属于 属,与MAS2关系最为密切,序列相似性为97.8%。表型特征表明,XGS-01是嗜温的、硫氧化的、专性化能无机自养菌,以二氧化碳作为唯一碳源,以氧气作为唯一电子受体。在硫代硫酸盐氧化过程中,通过扫描电子显微镜和拉曼光谱显微镜证实,菌株XGS-01能产生元素α-S的细胞外硫。多相分类学结果表明,菌株XGS-01代表 属的一个新物种,命名为 sp. nov.。基因组分析证实,XGS-01通过一个多酶复合体进行硫代硫酸盐氧化,并含有硫化物氧化的 和 基因。对来自该属的五个可用基因组进行的比较基因组学分析表明,通过还原硫化合物氧化与氧还原耦合进行碳固定是该属成员之间保守的代谢途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/61d94a8cb74e/microorganisms-11-02569-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/c12466bd8624/microorganisms-11-02569-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/82520421b516/microorganisms-11-02569-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/61d94a8cb74e/microorganisms-11-02569-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/c12466bd8624/microorganisms-11-02569-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/82520421b516/microorganisms-11-02569-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebc0/10608990/61d94a8cb74e/microorganisms-11-02569-g003.jpg

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本文引用的文献

1
Thiomicrorhabdus immobilis sp. nov., a mesophilic sulfur-oxidizing bacterium isolated from sediment of a brackish lake in northern Japan.硫小杆菌属一新种,一种中温硫氧化细菌,从日本北部一个咸水湖的沉积物中分离得到。
Arch Microbiol. 2022 Sep 7;204(10):605. doi: 10.1007/s00203-022-03221-0.
2
sp. nov. and sp. nov.: novel sulphur-oxidizing chemolithoautotrophs isolated from the chemocline of Hospital Hole, an anchialine sinkhole in Spring Hill, Florida, USA.sp. nov. 和 sp. nov.:从美国佛罗里达州斯普林希尔(Spring Hill)的一个海蚀洞(anchialine sinkhole)——医院洞(Hospital Hole)的化能层中分离出来的新型硫磺氧化化学自养菌。
Int J Syst Evol Microbiol. 2022 Mar;72(3). doi: 10.1099/ijsem.0.005233.
3
Characterization of sp. nov., a Novel Bacterium Predominant in Deep-Sea Hydrothermal Vents and Comparative Genomic Analyses of the Genus .
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Front Microbiol. 2021 Feb 26;12:626705. doi: 10.3389/fmicb.2021.626705. eCollection 2021.
4
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Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004660.
5
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6
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Int J Syst Evol Microbiol. 2017 Oct;67(10):4205-4209. doi: 10.1099/ijsem.0.002279. Epub 2017 Sep 18.