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免疫原性细胞死亡相关长非编码 RNA 对肺腺癌的预后价值和免疫图谱。

Prognostic value and immune landscapes of immunogenic cell death-associated lncRNAs in lung adenocarcinoma.

机构信息

Department of Thoracic Surgery, The Second Affiliated Hospital of Nanchang University, 1 Minde Road, Nanchang, 330006, China.

Jiangxi Medical College, Nanchang University, Nanchang, 330006, China.

出版信息

Sci Rep. 2023 Nov 6;13(1):19151. doi: 10.1038/s41598-023-46669-w.


DOI:10.1038/s41598-023-46669-w
PMID:37932413
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10628222/
Abstract

Immunogenic cell death (ICD) has been demonstrated to activate T cells to kill tumor cells, which is closely related to tumor development, and long noncoding RNAs (lncRNAs) are also involved. However, it is not known whether ICD-related lncRNAs are associated with the development of lung adenocarcinoma (LUAD). We downloaded ICD-related genes from GeneCards and the transcriptome statistics of LUAD patients from The Cancer Genome Atlas (TCGA) and subsequently developed and verified a predictive model. A successful model was used together with other clinical features to construct a nomogram for predicting patient survival. To further study the mechanism of tumor action and to guide therapy, we performed enrichment analysis, tumor microenvironment analysis, somatic mutation analysis, drug sensitivity analysis and real-time quantitative polymerase chain reaction (RT-qPCR) analysis. Nine ICD-related lncRNAs with significant prognostic relevance were selected for model construction. Survival analysis demonstrated that overall survival was substantially shorter in the high-risk group than in the low-risk group (P < 0.001). This model was predictive of prognosis across all clinical subgroups. Cox regression analysis further supported the independent prediction ability of the model. Ultimately, a nomogram depending on stage and risk score was created and showed a better predictive performance than the nomogram without the risk score. Through enrichment analysis, the enriched pathways in the high-risk group were found to be primarily associated with metabolism and DNA replication. Tumor microenvironment analysis suggested that the immune cell concentration was lower in the high-risk group. Somatic mutation analysis revealed that the high-risk group contained more tumor mutations (P = 0.00018). Tumor immune dysfunction and exclusion scores exhibited greater sensitivity to immunotherapy in the high-risk group (P < 0.001). Drug sensitivity analysis suggested that the predictive model can also be applied to the choice of chemotherapy drugs. RT-qPCR analysis also validated the accuracy of the constructed model based on nine ICD-related lncRNAs. The prognostic model constructed based on the nine ICD-related lncRNAs showed good application value in assessing prognosis and guiding clinical therapy.

摘要

免疫原性细胞死亡 (ICD) 已被证明可激活 T 细胞杀死肿瘤细胞,这与肿瘤的发生密切相关,而长链非编码 RNA (lncRNA) 也参与其中。然而,目前尚不清楚 ICD 相关的 lncRNA 是否与肺腺癌 (LUAD) 的发生有关。我们从 GeneCards 下载了 ICD 相关基因,并从癌症基因组图谱 (TCGA) 下载了 LUAD 患者的转录组统计数据,随后开发并验证了一个预测模型。成功的模型与其他临床特征一起用于构建预测患者生存的列线图。为了进一步研究肿瘤作用的机制并指导治疗,我们进行了富集分析、肿瘤微环境分析、体细胞突变分析、药物敏感性分析和实时定量聚合酶链反应 (RT-qPCR) 分析。选择了 9 个具有显著预后相关性的 ICD 相关 lncRNA 进行模型构建。生存分析表明,高危组的总生存期明显短于低危组 (P < 0.001)。该模型在所有临床亚组中均具有预后预测能力。Cox 回归分析进一步支持了该模型的独立预测能力。最终,创建了一个基于分期和风险评分的列线图,该图显示出比不包含风险评分的列线图更好的预测性能。通过富集分析,发现高危组中富集的途径主要与代谢和 DNA 复制有关。肿瘤微环境分析表明,高危组的免疫细胞浓度较低。体细胞突变分析显示,高危组包含更多的肿瘤突变 (P = 0.00018)。肿瘤免疫功能障碍和排除评分显示高危组对免疫治疗更敏感 (P < 0.001)。药物敏感性分析表明,该预测模型也可应用于化疗药物的选择。RT-qPCR 分析也验证了基于 9 个 ICD 相关 lncRNA 构建的模型的准确性。基于 9 个 ICD 相关 lncRNA 构建的预后模型在评估预后和指导临床治疗方面具有良好的应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/33315dd428d6/41598_2023_46669_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/546e6a2cd8d0/41598_2023_46669_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/e9b70a0ff911/41598_2023_46669_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/c75ddf4ef3e9/41598_2023_46669_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/6e6b0157d276/41598_2023_46669_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/b666db7cc240/41598_2023_46669_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/6ae10d269b2f/41598_2023_46669_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/da0e5696f62c/41598_2023_46669_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/33315dd428d6/41598_2023_46669_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/546e6a2cd8d0/41598_2023_46669_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/e9b70a0ff911/41598_2023_46669_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/c75ddf4ef3e9/41598_2023_46669_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/6e6b0157d276/41598_2023_46669_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/b666db7cc240/41598_2023_46669_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/6ae10d269b2f/41598_2023_46669_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/da0e5696f62c/41598_2023_46669_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/092a/10628222/33315dd428d6/41598_2023_46669_Fig8_HTML.jpg

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引用本文的文献

[1]
Regulation of immunogenic cell death and potential applications in cancer therapy.

Front Immunol. 2025-3-26

[2]
A new paradigm for cancer immunotherapy: targeting immunogenic cell death-related noncoding RNA.

Front Immunol. 2025-1-23

本文引用的文献

[1]
scAAGA: Single cell data analysis framework using asymmetric autoencoder with gene attention.

Comput Biol Med. 2023-10

[2]
Predicting metabolite-disease associations based on auto-encoder and non-negative matrix factorization.

Brief Bioinform. 2023-9-20

[3]
Gene function and cell surface protein association analysis based on single-cell multiomics data.

Comput Biol Med. 2023-5

[4]
Investigating cardiotoxicity related with hERG channel blockers using molecular fingerprints and graph attention mechanism.

Comput Biol Med. 2023-2

[5]
Upregulated Immunogenic Cell-Death-Associated Gene Signature Predicts Reduced Responsiveness to Immune-Checkpoint-Blockade Therapy and Poor Prognosis in High-Grade Gliomas.

Cells. 2022-11-17

[6]
Prescreening of tumor samples for tumor-centric transcriptome analyses of lung adenocarcinoma.

BMC Cancer. 2022-11-17

[7]
Prognostic value of antitumor drug targets prediction using integrated bioinformatic analysis for immunogenic cell death-related lncRNA model based on stomach adenocarcinoma characteristics and tumor immune microenvironment.

Front Pharmacol. 2022-10-14

[8]
Predicting the potential human lncRNA-miRNA interactions based on graph convolution network with conditional random field.

Brief Bioinform. 2022-11-19

[9]
Cancer-associated fibroblast-specific lncRNA LINC01614 enhances glutamine uptake in lung adenocarcinoma.

J Hematol Oncol. 2022-10-8

[10]
Machine learning-based tumor-infiltrating immune cell-associated lncRNAs for predicting prognosis and immunotherapy response in patients with glioblastoma.

Brief Bioinform. 2022-11-19

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