Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos 62210, Mexico.
Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de México, Querétaro 76230, Querétaro, Mexico.
Nucleic Acids Res. 2024 Jan 5;52(D1):D255-D264. doi: 10.1093/nar/gkad1072.
RegulonDB is a database that contains the most comprehensive corpus of knowledge of the regulation of transcription initiation of Escherichia coli K-12, including data from both classical molecular biology and high-throughput methodologies. Here, we describe biological advances since our last NAR paper of 2019. We explain the changes to satisfy FAIR requirements. We also present a full reconstruction of the RegulonDB computational infrastructure, which has significantly improved data storage, retrieval and accessibility and thus supports a more intuitive and user-friendly experience. The integration of graphical tools provides clear visual representations of genetic regulation data, facilitating data interpretation and knowledge integration. RegulonDB version 12.0 can be accessed at https://regulondb.ccg.unam.mx.
RegulonDB 是一个数据库,包含了大肠杆菌 K-12 转录起始调控的最全面的知识体系,包括来自经典分子生物学和高通量方法的数据。在这里,我们描述了自我们 2019 年的 NAR 论文以来的生物学进展。我们解释了这些变化是如何满足 FAIR 要求的。我们还展示了 RegulonDB 计算基础设施的完整重建,这大大提高了数据存储、检索和可访问性,从而支持更直观和用户友好的体验。图形工具的集成提供了遗传调控数据的清晰可视化表示,有助于数据解释和知识整合。RegulonDB 版本 12.0 可在 https://regulondb.ccg.unam.mx 上访问。