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与新西兰本地植物相关的甲基杆菌物种多样性。

Diversity of Methylobacterium species associated with New Zealand native plants.

机构信息

Te Aka Mātuatua-School of Science, Te Whare Wānanga o Waikato-University of Waikato, Private Bag 3105, Hamilton 3240, Aotearoa, New Zealand.

出版信息

FEMS Microbiol Lett. 2023 Jan 17;370. doi: 10.1093/femsle/fnad124.

DOI:10.1093/femsle/fnad124
PMID:37985695
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10699869/
Abstract

Methylobacterium species are abundant colonizers of the phyllosphere due to the availability of methanol, a waste product of pectin metabolism during plant cell division. The phyllosphere is an extreme environment, with a landscape that is heterogeneous and continuously changing as the plant grows and is exposed to high levels of ultraviolet irradiation. Geographically, New Zealand (NZ) has been isolated for over a million years, has a biologically diverse flora, and is considered a biodiversity hotspot, with most native plants being endemic. We therefore hypothesize that the phyllosphere of NZ native plants harbor diverse groups of Methylobacterium species. Leaf imprinting using methanol-supplemented agar medium was used to isolate bacteria, and diversity was determined using ARDRA and 16S rRNA gene sequencing. Methylobacterium species were successfully isolated from the phyllosphere of 18 of the 20 native NZ plant species in this study, and six different species were identified: M. marchantiae, M. mesophilicum, M. adhaesivum, M. komagatae, M. extorquens, and M. phyllosphaerae. Other α, β, and γ-Proteobacteria, Actinomycetes, Bacteroidetes, and Firmicutes were also isolated, highlighting the presence of other potentially novel methanol utilizers within this ecosystem. This study identified that Methylobacterium are abundant members of the NZ phyllosphere, with species diversity and composition dependent on plant species.

摘要

甲基杆菌属物种是叶际的丰富定植者,因为甲醇的可用性,甲醇是植物细胞分裂过程中果胶代谢的废物产物。叶际是一个极端的环境,随着植物的生长和暴露在高水平的紫外线照射下,景观是异质的和不断变化的。从地理位置上看,新西兰(NZ)已经隔离了一百多万年,拥有丰富多样的植物群,被认为是生物多样性热点地区,大多数本地植物都是特有种。因此,我们假设 NZ 本地植物的叶际蕴藏着多种多样的甲基杆菌属物种。使用添加甲醇的琼脂培养基进行叶印,以分离细菌,并使用 ARDRA 和 16S rRNA 基因测序来确定多样性。本研究成功地从 20 种 NZ 本地植物中的 18 种中分离出叶际甲基杆菌属,鉴定出 6 种不同的物种:Methylobacterium marchantiae、Methylobacterium mesophilicum、Methylobacterium adhaesivum、Methylobacterium komagatae、Methylobacterium extorquens 和 Methylobacterium phyllosphaerae。还分离出其他α、β和γ-变形菌、放线菌、拟杆菌门和厚壁菌门,突出了该生态系统中其他潜在的新型甲醇利用者的存在。本研究表明,甲基杆菌属是 NZ 叶际的丰富成员,其物种多样性和组成取决于植物物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c530/10699869/a150156e8c08/fnad124fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c530/10699869/a150156e8c08/fnad124fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c530/10699869/a150156e8c08/fnad124fig1.jpg

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本文引用的文献

1
Distinct phyllosphere bacterial communities on Arabidopsis wax mutant leaves.拟南芥蜡突变体表皮细菌群落的特异性。
PLoS One. 2013 Nov 5;8(11):e78613. doi: 10.1371/journal.pone.0078613. eCollection 2013.
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Genetic and metabolic diversity of pink-pigmented facultative methylotrophs in phyllosphere of tropical plants.热带植物叶际中粉红着色兼性甲基营养菌的遗传和代谢多样性。
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Microbial life in the phyllosphere.叶际微生物生活。
Nat Rev Microbiol. 2012 Dec;10(12):828-40. doi: 10.1038/nrmicro2910.
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Methylopila musalis sp. nov., an aerobic, facultatively methylotrophic bacterium isolated from banana fruit.甲基营养型穆拉氏菌(Methylopila musalis),一株好氧、兼性甲基营养型细菌,从香蕉果实中分离得到。
Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1847-1852. doi: 10.1099/ijs.0.042028-0. Epub 2012 Sep 14.
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Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce.农田生态系统中的叶际微生物组:生菜田间生长过程中细菌群落组成的时空变化。
ISME J. 2012 Oct;6(10):1812-22. doi: 10.1038/ismej.2012.32. Epub 2012 Apr 26.
6
Analysis of 16S rRNA and mxaF genes revealing insights into Methylobacterium niche-specific plant association.基于 16S rRNA 和 mxaF 基因分析揭示甲基杆菌植物专性生境定殖的特征。
Genet Mol Biol. 2012 Jan;35(1):142-8. doi: 10.1590/s1415-47572012005000017. Epub 2012 Feb 3.
7
Epiphytic pink-pigmented methylotrophic bacteria enhance germination and seedling growth of wheat (Triticum aestivum) by producing phytohormone.附生粉红着色甲基营养型细菌通过产生植物激素来促进小麦(Triticum aestivum)的发芽和幼苗生长。
Antonie Van Leeuwenhoek. 2012 May;101(4):777-86. doi: 10.1007/s10482-011-9692-9. Epub 2011 Dec 27.
8
Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum.产叶甲基杆菌(Methylobacterium gnaphalii),从 spicatum 属的斑种草叶片中分离得到。
Int J Syst Evol Microbiol. 2012 Nov;62(Pt 11):2602-2607. doi: 10.1099/ijs.0.037713-0. Epub 2011 Dec 23.
9
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice.叶片和根际土壤中微生物群落的宏蛋白质组学分析。
ISME J. 2012 Jul;6(7):1378-90. doi: 10.1038/ismej.2011.192. Epub 2011 Dec 22.
10
Diversity and biogeography of selected phyllosphere bacteria with special emphasis on Methylobacterium spp.具有特殊强调的叶际细菌(尤其是甲基杆菌属)的多样性和生物地理学
Syst Appl Microbiol. 2011 Dec;34(8):621-30. doi: 10.1016/j.syapm.2011.08.005. Epub 2011 Oct 13.