Department of Biochemistry and Molecular Biology, George Wise Faculty of Life Sciences, Tel Aviv University, 69978, Ramat Aviv, Israel.
Department of Biochemistry and Biophysics, University of Rochester Medical Center, 601 Elmwood Ave., Box 712, Rochester, NY, 14642, USA.
Sci Rep. 2023 Nov 21;13(1):20420. doi: 10.1038/s41598-023-47478-x.
Previously, we have identified a novel human metastasis-inducing lncRNA (named SKAI1BC), that suppresses the KAI1/CD82 metastasis-suppressing gene and is upregulated in triple negative breast cancer and melanoma derived cell lines. Modeling of the SKAI1BC lncRNA secondary structure and its potential interaction with Inforna compounds, led us to identify several compounds that might bind the SKAI1BC lncRNA. We found that these compounds inhibit metastasis invasion and cell migration in culture, in all eight types of solid human cancers tested: several of which are the most lethal and/or frequent human malignancies. Moreover, in most cases, the mechanism of action of several of our compounds involves enhancement of KAI1/CD82 RNA level depending on the specific compound and the human tumor type. With the epigenetic inactivation of KAI1/CD82 in at least ten additional solid human cancers, this implies a very good chance to broaden the spectrum of human cancers affected by our compounds. This is the first time that modeling of a large lncRNA (> 700 bp) secondary structure followed by its potential interaction with Inforna like compounds database has led to the identification of potential biologically active small molecule drugs.
此前,我们鉴定了一种新型人类转移诱导长非编码 RNA(命名为 SKAI1BC),它可以抑制 KAI1/CD82 转移抑制基因,在三阴性乳腺癌和黑色素瘤来源的细胞系中上调。对 SKAI1BC lncRNA 二级结构及其与 Inforna 化合物潜在相互作用的建模,使我们能够鉴定出几种可能与 SKAI1BC lncRNA 结合的化合物。我们发现这些化合物在所有 8 种测试的实体人类癌症中抑制转移侵袭和细胞迁移:其中一些是最致命和/或最常见的人类恶性肿瘤。此外,在大多数情况下,我们的几种化合物的作用机制涉及根据特定化合物和人类肿瘤类型增强 KAI1/CD82 RNA 水平。由于至少十种其他实体人类癌症中 KAI1/CD82 的表观遗传失活,这意味着我们的化合物可能会广泛影响人类癌症的机会非常好。这是首次通过对大型 lncRNA(>700bp)二级结构进行建模,然后对其与 Inforna 样化合物数据库的潜在相互作用进行建模,从而鉴定出潜在的具有生物活性的小分子药物。