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在氨基酸磷酸酯和相变化的驱动下,水溶液中的自发和选择性肽延伸。

Spontaneous and Selective Peptide Elongation in Water Driven by Aminoacyl Phosphate Esters and Phase Changes.

机构信息

DFG Cluster of Excellence livMatS @FIT─Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany.

Freiburg Center for Interactive Materials and Bioinspired Technologies (FIT), University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany.

出版信息

J Am Chem Soc. 2023 Dec 6;145(48):26086-26094. doi: 10.1021/jacs.3c07918. Epub 2023 Nov 22.

Abstract

Nature chose phosphates to activate amino acids, where reactive intermediates and complex machinery drive the construction of polyamides. Outside of biology, the pathways and mechanisms that allow spontaneous and selective peptide elongation in aqueous abiotic systems remain unclear. Herein we work to uncover those pathways by following the systems chemistry of aminoacyl phosphate esters, synthetic counterparts of aminoacyl adenylates. The phosphate esters act as solubility tags, making hydrophobic amino acids and their oligomers soluble in water and enabling selective elongation and different pathways to emerge. Thus, oligomers up to dodecamers were synthesized in one flask and on the minute time scale, where consecutive additions activated autonomous phase changes. Depending on the pathway, the resulting phases initially carry nonpolar peptides and amphiphilic oligomers containing phosphate esters. During elongation and phosphate release, shorter oligomers dominate in solution, while the aggregated phase favors the presence of longer oligomers due to their self-assembly propensity. Furthermore we demonstrated that the solution phases can be isolated and act as a new environment for continuous elongation, by adding various phosphate esters. These findings suggest that the systems chemistry of aminoacyl phosphate esters can activate a selection mechanism for peptide bond formation by merging aqueous synthesis and self-assembly.

摘要

自然界选择磷酸盐来激活氨基酸,在那里,反应中间体和复杂的机制驱动着聚酰胺的构建。在生物学之外,允许在无水非生物系统中自发和选择性地延伸肽的途径和机制仍不清楚。在这里,我们通过研究氨酰磷酸酯的系统化学来探索这些途径,氨酰磷酸酯是氨酰腺苷酸的合成对应物。磷酸酯作为可溶性标记物,使疏水性氨基酸及其低聚物在水中可溶,并使选择性延伸和不同途径得以出现。因此,在一个烧瓶中,在一分钟的时间尺度内,就可以合成多达十二聚体的低聚物,其中连续的添加激活了自主的相变化。根据途径的不同,最初形成的相含有非极性肽和含有磷酸酯的两亲性低聚物。在延伸和磷酸释放过程中,较短的低聚物在溶液中占主导地位,而聚集相由于其自组装倾向而有利于较长低聚物的存在。此外,我们还证明了通过添加各种磷酸酯,可以将溶液相分离出来,并作为连续延伸的新环境。这些发现表明,氨酰磷酸酯的系统化学可以通过合并水相合成和自组装来激活肽键形成的选择机制。

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