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磷酸酯混合酸酐与氨基酸和肽的分子内水解途径的进化重要性。

Evolutionary importance of the intramolecular pathways of hydrolysis of phosphate ester mixed anhydrides with amino acids and peptides.

作者信息

Liu Ziwei, Beaufils Damien, Rossi Jean-Christophe, Pascal Robert

机构信息

Institut des Biomolécules Max Mousseron, UMR5247 CNRS - University of Montpellier.

出版信息

Sci Rep. 2014 Dec 11;4:7440. doi: 10.1038/srep07440.

DOI:10.1038/srep07440
PMID:25501391
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4262824/
Abstract

Aminoacyl adenylates (aa-AMPs) constitute essential intermediates of protein biosynthesis. Their polymerization in aqueous solution has often been claimed as a potential route to abiotic peptides in spite of a highly efficient CO2-promoted pathway of hydrolysis. Here we investigate the efficiency and relevance of this frequently overlooked pathway from model amino acid phosphate mixed anhydrides including aa-AMPs. Its predominance was demonstrated at CO2 concentrations matching that of physiological fluids or that of the present-day ocean, making a direct polymerization pathway unlikely. By contrast, the occurrence of the CO2-promoted pathway was observed to increase the efficiency of peptide bond formation owing to the high reactivity of the N-carboxyanhydride (NCA) intermediate. Even considering CO2 concentrations in early Earth liquid environments equivalent to present levels, mixed anhydrides would have polymerized predominantly through NCAs. The issue of a potential involvement of NCAs as biochemical metabolites could even be raised. The formation of peptide-phosphate mixed anhydrides from 5(4H)-oxazolones (transiently formed through prebiotically relevant peptide activation pathways) was also observed as well as the occurrence of the reverse cyclization process in the reactions of these mixed anhydrides. These processes constitute the core of a reaction network that could potentially have evolved towards the emergence of translation.

摘要

氨酰腺苷酸(aa-AMPs)是蛋白质生物合成的关键中间体。尽管存在高效的二氧化碳促进的水解途径,但它们在水溶液中的聚合常被认为是生成非生物肽的潜在途径。在此,我们研究了这条常被忽视的途径从包括aa-AMPs在内的模型氨基酸磷酸混合酸酐开始的效率和相关性。在与生理流体或现代海洋二氧化碳浓度相当的情况下,证明了该途径的主导地位,这使得直接聚合途径不太可能。相比之下,由于N-羧基环酐(NCA)中间体的高反应性,观察到二氧化碳促进的途径的出现提高了肽键形成的效率。即使考虑到早期地球液体环境中与当前水平相当的二氧化碳浓度,混合酸酐也将主要通过NCA进行聚合。甚至可能会提出NCA作为生化代谢物潜在参与的问题。还观察到由5(4H)-恶唑酮(通过与生命起源相关的肽活化途径瞬时形成)形成肽-磷酸混合酸酐,以及这些混合酸酐反应中反向环化过程的发生。这些过程构成了一个反应网络的核心,该网络可能已经朝着翻译的出现方向进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/662b95f767da/srep07440-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/1f191bd7c185/srep07440-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/7724061d813c/srep07440-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/db0f40026bac/srep07440-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/ef267c20813a/srep07440-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/617e8af447bb/srep07440-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/42b9f966aee8/srep07440-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/662b95f767da/srep07440-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/1f191bd7c185/srep07440-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/7724061d813c/srep07440-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/db0f40026bac/srep07440-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/ef267c20813a/srep07440-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/617e8af447bb/srep07440-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/42b9f966aee8/srep07440-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab31/4262824/662b95f767da/srep07440-f7.jpg

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