Department of Laboratory Medicine, Gyeongsang National University College of Medicine, Gyeongsang National University Hospital, Jinju, Republic of Korea.
Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, Republic of Korea.
Int J Syst Evol Microbiol. 2023 Nov;73(11). doi: 10.1099/ijsem.0.006187.
An obligate anaerobic, Gram-negative, rod-shaped and non-spore-forming bacterium, designated as strain GYB001, was isolated from the blood of a patient with a sigmoid colon perforation. Taxonomic characterization of the novel isolate was performed using a polyphasic approach. A phylogenetic analysis based on 16S rRNA gene and whole genome sequences revealed that GYB001 represented a member of the genus , in the family . The closest species, based on 16S rRNA sequence, was DSM 23371 with 97.4 % similarity. Average nucleotide identity and digital DNA-DNA hybridization values between strain GYB001 and DSM 23371 were 86.7 and 28.7% and between GYB001 and JCM 18682 were 86.6 and 27.7 %, respectively. The genome was 6.57 Mbp long with 43.3 mol% G+C content. Colonies on Brucella blood agar (BBA) were circular, convex, smooth, grey and small in size. Growth was observed on trypticase soy agar (TSA), TSA +5 % sheep blood and agar. Growth occurred at 18-42 °C on BBA in the presence of 0-3 % NaCl (w/v) and at pH 6.0-8.5. The major polar lipids were phosphatidylethanolamine and phospholipids. The major fatty acids in strain GYB001 were anteiso-C and iso-C 3-OH, and the predominant respiratory quinones were menaquinone-10 (MK-10) and MK-9. The cell wall contained -diaminopimelic acid. Considering these phenotypic features and comparative genome analyses, we propose strain GYB001 as the type strain of sp. nov. (=KCTC 25738=KBN12P06525=LMG 32797).
一株严格厌氧、革兰氏阴性、杆状、非孢子形成的细菌,被命名为 GYB001 菌株,从一名乙状结肠穿孔患者的血液中分离得到。采用多相分类法对新分离株进行了分类鉴定。基于 16S rRNA 基因和全基因组序列的系统发育分析表明,GYB001 代表了 属的一个成员,属于 科。基于 16S rRNA 序列,最接近的物种是 DSM 23371,相似度为 97.4%。菌株 GYB001 与 DSM 23371 之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 86.7%和 28.7%,与 JCM 18682 之间分别为 86.6%和 27.7%。基因组全长 6.57 Mbp,G+C 含量为 43.3mol%。在 Brucella 血琼脂(BBA)上的菌落为圆形、凸起、光滑、灰色且体积小。在胰蛋白酶大豆琼脂(TSA)、TSA+5%绵羊血和 琼脂上观察到生长。在 BBA 上,在 0-3%NaCl(w/v)和 pH 6.0-8.5 的条件下,在 18-42°C 之间生长。菌株 GYB001 的主要极性脂是磷脂酰乙醇胺和磷脂。菌株 GYB001 的主要脂肪酸是 anteiso-C 和 iso-C 3-OH,主要呼吸醌是menaquinone-10 (MK-10) 和 MK-9。细胞壁含有 -二氨基庚二酸。考虑到这些表型特征和比较基因组分析,我们建议将 GYB001 菌株作为 sp. nov. 的模式菌株(=KCTC 25738=KBN12P06525=LMG 32797)。