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洞悉质粒在泛菌属多功能性中的潜在作用。

Insights into the Potential Role of Plasmids in the Versatility of the Genus Pantoea.

机构信息

Department of Biological Sciences, Sunandan Divatia School of Science, NMIMS Deemed to be University, Mumbai, 400056, India.

出版信息

Mol Biotechnol. 2024 Dec;66(12):3398-3414. doi: 10.1007/s12033-023-00960-3. Epub 2023 Nov 26.

Abstract

In the past two decades, 25 different species of the genus Pantoea within the Enterobacteriaceae family, have been isolated from different environmental niches. These species have a wide range of biological roles. Versatility in functions and hosts indicate that this genus has undergone extensive genetic diversification, which can be attributed to the different extra-chromosomal genetic elements or plasmids found across this genus. We have analyzed the functions of these plasmids and categorized them into four major groups for a better understanding of their future applications. The first and second group includes plasmids that contribute to genetic diversification and pathogenicity, respectively. The third group comprises cryptic plasmids of Pantoea. The last group includes plasmids that play a role in the metabolic versatility of the genus Pantoea. We have analyzed the data available up to May 2023 from two databases (viz; NCBI and PLSDB). In our analysis we have found a vast gap in knowledge. Complete gene annotations are available for only a few of the plasmids. This review highlights these challenges as an avenue for future research.

摘要

在过去的二十年中,肠杆菌科中的泛菌属已经从不同的环境小生境中分离出了 25 个不同的种。这些物种具有广泛的生物学作用。功能和宿主的多样性表明,这个属经历了广泛的遗传多样化,这可以归因于该属中发现的不同的染色体外遗传元件或质粒。我们分析了这些质粒的功能,并将它们分为四大类,以便更好地了解它们未来的应用。第一组和第二组分别包括有助于遗传多样化和致病性的质粒。第三组包括泛菌属的隐秘质粒。最后一组包括在泛菌属代谢多功能性中起作用的质粒。我们分析了截至 2023 年 5 月来自两个数据库(即 NCBI 和 PLSDB)的可用数据。在我们的分析中,我们发现了知识的巨大差距。只有少数质粒有完整的基因注释。本综述强调了这些挑战,作为未来研究的一个途径。

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