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用于细胞介导递送的基因编码LYTACs的定向进化

Directed Evolution of Genetically Encoded LYTACs for Cell-Mediated Delivery.

作者信息

Yang Jonathan Lee, Yamada-Hunter Sean A, Labanieh Louai, Sotillo Elena, Cheah Joleen S, Roberts David S, Mackall Crystal L, Ting Alice Y, Bertozzi Carolyn R

机构信息

Department of Chemistry and Sarafan ChEM-H, Stanford University, Stanford, CA, USA.

Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.

出版信息

bioRxiv. 2023 Nov 15:2023.11.14.567117. doi: 10.1101/2023.11.14.567117.

DOI:10.1101/2023.11.14.567117
PMID:38014030
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10680704/
Abstract

Lysosome-targeting chimeras (LYTACs) are a promising therapeutic modality to drive the degradation of extracellular proteins. However, early versions of LYTAC contain synthetic glycopeptides that cannot be genetically encoded. Here we present our designs for a fully genetically encodable LYTAC (GELYTAC), making our tool compatible with integration into therapeutic cells for targeted delivery at diseased sites. To achieve this, we replaced the glycopeptide portion of LYTACs with the protein insulin like growth factor 2 (IGF2). After showing initial efficacy with wild type IGF2, we increased the potency of GELYTAC using directed evolution. Subsequently, we demonstrated that our engineered GELYTAC construct not only secretes from HEK293T cells but also from human primary T-cells to drive the uptake of various targets into receiver cells. Immune cells engineered to secrete GELYTAC thus represent a promising avenue for spatially-selective targeted protein degradation.

摘要

溶酶体靶向嵌合体(LYTACs)是一种有前景的治疗方式,可促使细胞外蛋白质降解。然而,早期版本的LYTAC包含无法进行基因编码的合成糖肽。在此,我们展示了一种完全可基因编码的LYTAC(GELYTAC)的设计方案,使我们的工具能够与整合到治疗性细胞中兼容,以便在患病部位进行靶向递送。为实现这一目标,我们用蛋白质胰岛素样生长因子2(IGF2)取代了LYTAC的糖肽部分。在用野生型IGF2展示出初步疗效后,我们通过定向进化提高了GELYTAC的效力。随后,我们证明我们工程改造的GELYTAC构建体不仅能从人胚肾293T细胞分泌,还能从人原代T细胞分泌,从而促使各种靶标被受体细胞摄取。经工程改造分泌GELYTAC的免疫细胞因此代表了一种有前景的空间选择性靶向蛋白质降解途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/765e67844815/nihpp-2023.11.14.567117v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/2e53ed74f773/nihpp-2023.11.14.567117v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/5ba1c6817aca/nihpp-2023.11.14.567117v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/9c311ea1ce63/nihpp-2023.11.14.567117v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/79bfb57d9bdc/nihpp-2023.11.14.567117v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/765e67844815/nihpp-2023.11.14.567117v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/2e53ed74f773/nihpp-2023.11.14.567117v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/5ba1c6817aca/nihpp-2023.11.14.567117v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/9c311ea1ce63/nihpp-2023.11.14.567117v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/79bfb57d9bdc/nihpp-2023.11.14.567117v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f91/10680704/765e67844815/nihpp-2023.11.14.567117v1-f0005.jpg

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本文引用的文献

1
Transferrin receptor targeting chimeras for membrane protein degradation.用于膜蛋白降解的转铁蛋白受体靶向嵌合体
Nature. 2025 Feb;638(8051):787-795. doi: 10.1038/s41586-024-07947-3. Epub 2024 Sep 25.
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Bifunctional Molecules That Induce Both Targeted Degradation and Transcytosis of Extracellular Proteins in Brain Cells.可诱导脑细胞中细胞外蛋白质靶向降解和转胞吞作用的双功能分子。
J Am Chem Soc. 2024 Jun 10. doi: 10.1021/jacs.3c13320.
3
Insulin-like Growth Factor 2 (IGF2)-Fused Lysosomal Targeting Chimeras for Degradation of Extracellular and Membrane Proteins.
胰岛素样生长因子 2(IGF2)融合溶酶体靶向嵌合体降解细胞外和膜蛋白。
J Am Chem Soc. 2023 Nov 8;145(44):24272-24283. doi: 10.1021/jacs.3c08886. Epub 2023 Oct 30.
4
Elucidating the cellular determinants of targeted membrane protein degradation by lysosome-targeting chimeras.阐明溶酶体靶向嵌合体靶向膜蛋白降解的细胞决定因素。
Science. 2023 Oct 20;382(6668):eadf6249. doi: 10.1126/science.adf6249.
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Comprehensive Characterization of Endogenous Phospholamban Proteoforms Enabled by Photocleavable Surfactant and Top-down Proteomics.光裂解表面活性剂和自上而下蛋白质组学实现内源性磷蛋白全面特征分析。
Anal Chem. 2023 Sep 5;95(35):13091-13100. doi: 10.1021/acs.analchem.3c01618. Epub 2023 Aug 21.
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Targeted Lysosomal Degradation of Secreted and Cell Surface Proteins through the LRP-1 Pathway.通过 LRP-1 途径靶向溶酶体降解分泌蛋白和细胞表面蛋白。
J Am Chem Soc. 2023 Aug 30;145(34):18705-18710. doi: 10.1021/jacs.3c05109. Epub 2023 Aug 17.
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ROTACs leverage signaling-incompetent R-spondin for targeted protein degradation.ROTACs 利用信号失活的 R -spondin 进行靶向蛋白降解。
Cell Chem Biol. 2023 Jul 20;30(7):739-752.e8. doi: 10.1016/j.chembiol.2023.05.010. Epub 2023 Jun 14.
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