Department of Reproductive Medicine, Binzhou Medical University Hospital, No. 661 Huanghe 2nd Road, Binzhou, 256603, China.
Department of Radiology, Binzhou Medical University Hospital, Binzhou, China.
Biochem Genet. 2024 Aug;62(4):2810-2829. doi: 10.1007/s10528-023-10583-7. Epub 2023 Nov 29.
Endometriosis (EMT) is a prevalent gynecological disorder characterized by pain and infertility associated with the menstrual cycle. Pyroptosis, an emerging cell death mechanism, has been implicated in the pathogenesis of diverse diseases, highlighting its pivotal role in disease progression. Therefore, our study aimed to investigate the impact of pyroptosis in EMT using a comprehensive bioinformatics approach. We initially obtained two datasets from the Gene Expression Omnibus database and performed differential expression analysis to identify pyroptosis-related genes (PRGs) that were differentially expressed between EMT and non-EMT samples. Subsequently, several machine learning algorithms, namely least absolute shrinkage selection operator regression, support vector machine-recursive feature elimination, and random forest algorithms were used to identify a hub gene to construct an effective diagnostic model for EMT. Receiver operating characteristic curve analysis, nomogram, calibration curve, and decision curve analysis were applied to validate the performance of the model. Based on the selected hub gene, differential expression analysis between high- and low-expression groups was conducted to explore the functions and signaling pathways related to it. Additionally, the correlation between the hub gene and immune cells was investigated to gain insights into the immune microenvironment of EMT. Finally, a pyroptosis-related competing endogenous RNA network was constructed to elucidate the regulatory interactions of the hub gene. Our study revealed the potential contribution of a specific PRG to the pathogenesis of EMT, providing a novel perspective for clinical diagnosis and treatment of EMT.
子宫内膜异位症(EMT)是一种常见的妇科疾病,其特征是与月经周期相关的疼痛和不孕。细胞焦亡是一种新兴的细胞死亡机制,与多种疾病的发病机制有关,突出了其在疾病进展中的关键作用。因此,我们使用综合生物信息学方法研究细胞焦亡在 EMT 中的作用。我们首先从基因表达综合数据库中获得了两个数据集,并进行差异表达分析,以确定 EMT 和非 EMT 样本之间差异表达的细胞焦亡相关基因(PRGs)。随后,使用几种机器学习算法,如最小绝对收缩和选择算子回归、支持向量机-递归特征消除和随机森林算法,来识别一个枢纽基因,以构建 EMT 的有效诊断模型。我们应用接受者操作特征曲线分析、列线图、校准曲线和决策曲线分析来验证模型的性能。基于选定的枢纽基因,我们进行了高低表达组之间的差异表达分析,以探讨与该基因相关的功能和信号通路。此外,我们还研究了枢纽基因与免疫细胞之间的相关性,以深入了解 EMT 的免疫微环境。最后,我们构建了一个细胞焦亡相关的竞争性内源 RNA 网络,以阐明枢纽基因的调控相互作用。我们的研究揭示了特定 PRG 对 EMT 发病机制的潜在贡献,为 EMT 的临床诊断和治疗提供了新的视角。