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在三种不同温度下形成的烃类降解菌群落的分类学和预测功能特征。

Taxonomic and Predictive Functional Profile of Hydrocarbonoclastic Bacterial Consortia Developed at Three Different Temperatures.

机构信息

Department of Biochemistry, North-Eastern Hill University, Shillong, 793022, India.

出版信息

Curr Microbiol. 2023 Nov 28;81(1):22. doi: 10.1007/s00284-023-03529-0.

Abstract

Microbial community exhibit shift in composition in response to temperature variation. We report crude oil-degrading activity and high-throughput 16S rRNA gene sequencing (metagenome) profiles of four bacterial consortia enriched at three different temperatures in crude oil-amended Bushnell-Hass Medium from an oily sludge sediment. The consortia were referred to as O (4 ± 2 ℃ in 3% w/v crude oil), A (25 ± 2 ℃ in 1% w/v crude oil), H (25 ± 2 ℃ in 3% w/v crude oil), and X (45 ± 2 ℃ in 3% w/v crude oil). The hydrocarbon-degrading activity was highest for consortium A and H and lowest for consortium O. The metagenome profile revealed the predominance of Proteobacteria (62.12-1.25%) in each consortium, followed by Bacteroidota (18.94-37.77%) in the consortium O, A, and H. Contrarily, consortium X comprised 7.38% Actinomycetota, which was essentially low (< 0.09%) in other consortia, and only 0.41% Bacteroidota. The PICRUSt-based functional analysis predicted major functions associated with the metabolism and 5060 common KEGG Orthology (KOs). A total of 296 KOs were predicted exclusively in consortium X. Additionally, 247 KOs were predicted from xenobiotic biodegradation pathways. This study found that temperature had a stronger influence on the composition and function of the bacterial community than crude oil concentration.

摘要

微生物群落的组成会因温度变化而发生变化。我们报告了在从含油污泥沉积物中提取的布什内尔-哈斯培养基中,以三种不同温度富集的四个细菌共生体的原油降解活性和高通量 16S rRNA 基因测序(宏基因组)图谱。这些共生体分别被称为 O(3%w/v 原油中 4±2℃)、A(1%w/v 原油中 25±2℃)、H(3%w/v 原油中 25±2℃)和 X(3%w/v 原油中 45±2℃)。共生体 A 和 H 的烃类降解活性最高,而共生体 O 的活性最低。宏基因组图谱显示,每个共生体中优势的是变形菌门(62.12-1.25%),其次是拟杆菌门(18.94-37.77%),共生体 O、A 和 H 也是如此。相比之下,共生体 X 包含 7.38%的放线菌门,而其他共生体的放线菌门含量则很低(<0.09%),仅为 0.41%。基于 PICRUSt 的功能分析预测了与代谢相关的主要功能和 5060 个常见的 KEGG 直系同源物(KOs)。共生体 X 中预测到了总共 296 个 KO。此外,还从异生物质生物降解途径中预测到了 247 个 KO。本研究发现,温度对细菌群落的组成和功能的影响比原油浓度更强。

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