Division of Rheumatology, Department of Medicine V, Heidelberg University Hospital, Heidelberg, Germany.
Institute for Immunology, Heidelberg University Hospital, Heidelberg, Germany.
Nat Commun. 2023 Dec 8;14(1):8133. doi: 10.1038/s41467-023-43573-9.
Neutrophils are frequently studied in mouse models, but the extent to which findings translate to humans remains poorly defined. In an integrative analysis of 11 mouse and 13 human datasets, we find a strong correlation of neutrophil gene expression across species. In inflammation, neutrophils display substantial transcriptional diversity but share a core inflammation program. This program includes genes encoding IL-1 family members, CD14, IL-4R, CD69, and PD-L1. Chromatin accessibility of core inflammation genes increases in blood compared to bone marrow and further in tissue. Transcription factor enrichment analysis implicates members of the NF-κB family and AP-1 complex as important drivers, and HoxB8 neutrophils with JunB knockout show a reduced expression of core inflammation genes in resting and activated cells. In independent single-cell validation data, neutrophil activation by type I or type II interferon, G-CSF, and E. coli leads to upregulation in core inflammation genes. In COVID-19 patients, higher expression of core inflammation genes in neutrophils is associated with more severe disease. In vitro treatment with GM-CSF, LPS, and type II interferon induces surface protein upregulation of core inflammation members. Together, we demonstrate transcriptional conservation in neutrophils in homeostasis and identify a core inflammation program shared across heterogeneous inflammatory conditions.
中性粒细胞在小鼠模型中经常被研究,但研究结果在多大程度上适用于人类仍不清楚。在对 11 个小鼠和 13 个人类数据集的综合分析中,我们发现物种间中性粒细胞基因表达具有很强的相关性。在炎症中,中性粒细胞表现出大量的转录多样性,但具有一个核心炎症程序。这个程序包括编码白细胞介素 1 家族成员、CD14、白细胞介素 4 受体、CD69 和 PD-L1 的基因。与骨髓相比,核心炎症基因在血液中的染色质可及性增加,在组织中进一步增加。转录因子富集分析表明 NF-κB 家族和 AP-1 复合物的成员是重要的驱动因素,并且具有 JunB 缺失的 HoxB8 中性粒细胞在静息和激活细胞中表现出核心炎症基因表达的减少。在独立的单细胞验证数据中,I 型或 II 型干扰素、G-CSF 和大肠杆菌对中性粒细胞的激活导致核心炎症基因的上调。在 COVID-19 患者中,中性粒细胞中核心炎症基因的高表达与更严重的疾病相关。GM-CSF、LPS 和 II 型干扰素的体外治疗诱导核心炎症成员的表面蛋白上调。总之,我们证明了在稳态中性粒细胞中存在转录保守性,并确定了一个在异质炎症条件下共享的核心炎症程序。