Zayed Mohammed, Kim Yong-Chan, Lee Chang-Seop, Jeong Byung-Hoon
Korea Zoonosis Research Institute, Jeonbuk National University, Iksan 54531, Republic of Korea.
Department of Bioactive Material Sciences, Institute for Molecular Biology and Genetics, Jeonbuk National University, Jeonju 54896, Republic of Korea.
Diagnostics (Basel). 2023 Nov 23;13(23):3510. doi: 10.3390/diagnostics13233510.
Coronavirus disease 2019 (COVID-19) is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a single-stranded RNA virus. Toll-like receptor 7 () recognizes single-stranded RNA viruses. The gene plays a critical role in the human innate and adaptive immune response to SARS-CoV-2 infections. Genetic factors probably affect SARS-CoV-2 infection susceptibility. In the current study, our aim was to search for genetic variations associated with COVID-19 patients in the gene of a Korean population. We designed five gene-specific primers to cover the coding region of the human gene. Using amplicon sequencing, we screened the genetic polymorphisms in the coding region of the gene in COVID-19 patients and healthy controls. The genotype frequencies, allele frequencies, and Hardy-Weinberg equilibrium (HWE) were examined. We identified a low-frequency synonymous single nucleotide polymorphism (SNP) (rs864058) in the coding region of the gene. There were no significant differences in the genotype or allele frequencies of the rs864058 polymorphism between COVID-19 female patients and healthy controls ( = 1.0). In conclusion, (rs864058) polymorphism is low frequency in Korean populations and is not associated with SARS-CoV-2 infection.
2019冠状病毒病(COVID-19)由严重急性呼吸综合征冠状病毒2(SARS-CoV-2)引起,这是一种单链RNA病毒。Toll样受体7()识别单链RNA病毒。该基因在人类对SARS-CoV-2感染的固有免疫和适应性免疫反应中起关键作用。遗传因素可能影响SARS-CoV-2感染易感性。在本研究中,我们的目的是在韩国人群的该基因中寻找与COVID-19患者相关的基因变异。我们设计了五条基因特异性引物以覆盖人类该基因的编码区。使用扩增子测序,我们筛选了COVID-19患者和健康对照中该基因编码区的基因多态性。检查了基因型频率、等位基因频率和哈迪-温伯格平衡(HWE)。我们在该基因的编码区鉴定出一个低频同义单核苷酸多态性(SNP)(rs864058)。COVID-19女性患者与健康对照之间该rs864058多态性的基因型或等位基因频率没有显著差异(=1.0)。总之,(rs864058)多态性在韩国人群中为低频,且与SARS-CoV-2感染无关。